Organisms
Showing all 263 organisms.
The Substrates and Pathways columns refer to the aromatic substrates and aromatic metabolic pathways registered in eLignin.
| Organism ▲ ▼ | Strain ▲ ▼ | Type ▲ ▼ | Kingdom ▲ ▼ | Origin ▲ ▼ | No. of reported utilizable substrates ▲ ▼ | No. of reported aromatic pathways ▲ ▼ |
|---|---|---|---|---|---|---|
| Acetoanaerobium sp. | WJDL-Y2 | Unknown Gram stain | Bacteria | Pulp and Paper Mill effluent | 1 | 0 |
| Acetobacterium dehalogenans | MC | Gram positive | Bacteria | Wastewater sludge | 3 | 0 |
| Acetobacterium woodii | NZva16 | Gram positive | Bacteria | Sediment | 15 | 0 |
| Achromobacter denitrificans | SP1 | Gram negative | Bacteria | Soil | 3 | 1 |
| Acinetobacter baumannii | KMB1 | Gram negative | Bacteria | Termite gut | 7 | 0 |
| Acinetobacter baylyi | ADP1 | Gram negative | Bacteria | Lab-made derivative | 12 | 3 |
| Acinetobacter calcoaceticus | DSM 586 | Gram negative | Bacteria | Soil | 6 | 0 |
| Acinetobacter junii | 5ga | Gram negative | Bacteria | Soil | 4 | 0 |
| Acinetobacter radioresistens | S13 | Gram negative | Bacteria | Wastewater sludge | 2 | 1 |
| Acinetobacter sp. | Vasudevan isolate | Gram negative | Bacteria | Soil | 9 | 0 |
| Acinetobacter tandoii | Van Dexter isolate | Gram negative | Bacteria | Termite gut | 1 | 0 |
| Aeromonas formicans | Gupta strain | Gram negative | Bacteria | Unknown or Not Specified | 1 | 0 |
| Aeromonas sp. | L17 | Gram negative | Bacteria | Forest and wood samples | 6 | 0 |
| Agaricus bisporus | NRRL-20762 | White-rot fungus | Fungi | Soil | 1 | 0 |
| Agrobacterium tumefaciens | B6 | Gram negative | Bacteria | Soil | 1 | 1 |
| Alcaligenes faecalis | KD10 | Gram negative | Bacteria | Termite gut | 7 | 0 |
| Amycolatopsis sp. | 75iv2 (ATCC 39116) | Gram positive | Bacteria | Soil | 21 | 5 |
| Aneurinibacillus aneurinilyticus | ITRC S7 | Gram positive | Bacteria | Pulp and Paper Mill effluent | 1 | 0 |
| Anthracophyllum discolour | Acevedo isolate | White-rot fungus | Fungi | Forest and wood samples | 4 | 0 |
| Aromatoleum aromaticum | EbN1 | Gram negative | Bacteria | Sediment | 9 | 0 |
| Arthrobacter sp. | KB-1 | Gram positive | Bacteria | Seeds and hulls | 5 | 0 |
| Aspergillus flavus | F10 | Fungus | Fungi | Soil | 1 | 0 |
| Aspergillus nidulans | FGSC A4 | Filamentous fungus | Fungi | Unknown or Not Specified | 3 | 1 |
| Aspergillus sp. | F-3 | Fungus | Fungi | Soil | 1 | 0 |
| Auricularia auricula-judae | DSM 11326 | Fungus | Fungi | Unknown or Not Specified | 1 | 0 |
| Azoarcus anaerobius | LuFRes1 | Gram negative | Bacteria | Wastewater sludge | 8 | 0 |
| Azotobacter vinelandii | NBRC13581 | Gram negative | Bacteria | Soil | 4 | 0 |
| Azotobacter vinelandii | ATCC 12837 | Gram negative | Bacteria | Soil | 5 | 0 |
| Bacillus atrophaeus | B7 | Gram positive | Bacteria | Soil | 2 | 0 |
| Bacillus cereus | KD4 | Gram positive | Bacteria | Termite gut | 5 | 0 |
| Bacillus licheniformis | KB1 | Gram positive | Bacteria | Termite gut | 7 | 0 |
| Bacillus ligniniphilus | L1 | Gram positive | Bacteria | Sediment | 1 | 0 |
| Bacillus megaterium | Perestelo isolate | Gram positive | Bacteria | Compost | 1 | 0 |
| Bacillus pumilus | C6 | Gram positive | Bacteria | Soil | 2 | 0 |
| Bacillus sp. | ITRC S8 | Gram positive | Bacteria | Pulp and Paper Mill effluent | 1 | 0 |
| Bacillus sp. | CS-1 | Gram negative | Bacteria | Soil | 1 | 0 |
| Bacillus sphaericus | KD7 | Gram positive | Bacteria | Termite gut | 4 | 0 |
| Bacillus subtilis | KD8 | Gram positive | Bacteria | Termite gut | 6 | 0 |
| Bjerkandera adusta | Zi47 | Fungus | Fungi | Unknown or Not Specified | 1 | 0 |
| Bjerkandera adusta | FP-101809 | White-rot fungus | Fungi | Forest and wood samples | 1 | 0 |
| Bjerkandera adusta | NBRC 104974 | Fungus | Fungi | Forest and wood samples | 1 | 0 |
| Bradyrhizobium japonicum | USDA110 | Gram negative | Bacteria | Soil | 1 | 0 |
| Brettanomyces anomalus | NCYC 615 | Yeast | Fungi | Industrial plants | 4 | 0 |
| Brevibacillus agri | RJH-1 | Gram positive | Bacteria | Pulp and Paper Mill effluent | 1 | 0 |
| Brevibacillus parabrevis | MTCC 1210 | Gram positive | Bacteria | Pulp and Paper Mill effluent | 1 | 0 |
| Burkholderia cepacia | ATCC 29351 | Gram negative | Bacteria | Soil | 2 | 2 |
| Burkholderia cepacia | KK01 | Gram negative | Bacteria | Termite gut | 10 | 0 |
| Burkholderia cepacia | KF12 | Gram negative | Bacteria | Termite gut | 7 | 0 |
| Burkholderia cepacia | Song isolate 1 | Gram negative | Bacteria | Forest and wood samples | 10 | 0 |
| Burkholderia sp. | LIG30 | Gram negative | Bacteria | Soil | 1 | 0 |
| Burkholderia sp. | H1 | Gram negative | Bacteria | Forest and wood samples | 2 | 0 |
| Burkholderia sp. | VE22 | Gram negative | Bacteria | Termite gut | 2 | 0 |
| Candida albicans | CBS562 | Yeast | Fungi | Clinical isolate | 4 | 0 |
| Candida dubliniensis | CBS7987 | Yeast | Fungi | Clinical isolate | 4 | 0 |
| Candida maltosa | Fialova isolate | Yeast | Fungi | Wastewater sludge | 3 | 0 |
| Candida orthopsilosis | MCO457 | Yeast | Fungi | Clinical isolate | 4 | 0 |
| Candida parapsilosis | CBS604 | Yeast | Fungi | Clinical isolate | 7 | 2 |
| Candida tropicalis | HP15 | Yeast | Fungi | Unknown or Not Specified | 5 | 1 |
| Candida tropicalis | CBS94 | Yeast | Fungi | Clinical isolate | 4 | 0 |
| Ceriporiopsis subvermispora | FP-105752 | White-rot fungus | Fungi | Forest and wood samples | 3 | 0 |
| Citrobacter freundii | IITRL1 | Gram negative | Bacteria | Pulp and Paper Mill effluent | 1 | 0 |
| Citrobacter sp. | IITRSU7 | Gram negative | Bacteria | Pulp and Paper Mill effluent | 1 | 0 |
| Citrobacter sp. | VA53 | Gram negative | Bacteria | Termite gut | 1 | 0 |
| Clostridium methoxybenzovorans | SR3 | Gram positive | Bacteria | Wastewater sludge | 10 | 0 |
| Clostridium thermoaceticum | ATCC 39073 | Gram positive | Bacteria | Other | 2 | 0 |
| Comamonas acidovorans | KNB3 | Gram negative | Bacteria | Termite gut | 7 | 0 |
| Comamonas sp. | B-9 (CGMCC No. 4251) | Gram negative | Bacteria | Forest and wood samples | 8 | 0 |
| Comamonas sp. | E6 | Gram negative | Bacteria | Soil | 0 | 1 |
| Comamonas testosteroni | CNB-1 | Gram negative | Bacteria | Wastewater sludge | 5 | 1 |
| Comamonas testosteroni | BR6020 | Gram negative | Bacteria | Lab-made derivative | 12 | 1 |
| Corynebacterium glutamicum | ATCC13032 | Gram positive | Bacteria | Soil | 7 | 11 |
| Cryptococcus terreus | PB4 | Yeast | Fungi | Caves and mines | 6 | 0 |
| Cupriavidus basilensis | B-8 | Gram negative | Bacteria | Forest and wood samples | 1 | 3 |
| Cupriavidus laharis | 1263a | Gram negative | Bacteria | Soil | 4 | 0 |
| Cupriavidus necator | JMP134 | Gram negative | Bacteria | Soil | 11 | 2 |
| Cupriavidus necator | ATCC 17697 | Gram negative | Bacteria | Soil | 2 | 1 |
| Cupriavidus pinatubonensis | 1245 | Gram negative | Bacteria | Soil | 8 | 0 |
| Cyathus pallidus | NRRL-6529 | White-rot fungus | Fungi | Unknown or Not Specified | 1 | 0 |
| Cyathus stercoreus | ATCC 36910 | White-rot fungus | Fungi | Forest and wood samples | 1 | 0 |
| Cyathus stercoreus | NRRL-6573 | White-rot fungus | Fungi | Unknown or Not Specified | 1 | 0 |
| Daedalea flavida | FR17 | White-rot fungus | Fungi | Unknown or Not Specified | 1 | 0 |
| Desulfobacterium catecholicum | NZva20 | Gram negative | Bacteria | Sediment | 7 | 0 |
| Desulfobacterium phenolicum | Ph01 | Gram negative | Bacteria | Sediment | 9 | 0 |
| Dichomitus squalens | CBS 432.34 | White-rot fungus | Fungi | Unknown or Not Specified | 1 | 0 |
| Dysgonomonas sp. | WJDL-Y1 | Gram negative | Bacteria | Pulp and Paper Mill effluent | 1 | 0 |
| Emericella nidulans | APF4 | Fungus | Fungi | Soil | 1 | 0 |
| Enterobacter aerogenes | L7 | Gram negative | Bacteria | Forest and wood samples | 8 | 0 |
| Enterobacter cloacae | P241 | Gram negative | Bacteria | Soil | 1 | 0 |
| Enterobacter lignolyticus | SCF1 | Gram negative | Bacteria | Soil | 1 | 0 |
| Enterobacter soli | LF7 | Gram negative | Bacteria | Soil | 1 | 0 |
| Enterobacter sp. | DG-6 | Gram negative | Bacteria | Wastewater sludge | 4 | 0 |
| Exophiala jeanselmei | CBS 658.76 | Yeast | Fungi | Unknown or Not Specified | 30 | 0 |
| Flavimonas oryzihabitans | Song isolate 4 | Gram negative | Bacteria | Forest and wood samples | 7 | 0 |
| Flavobacterium lutescens | NBRC3084 | Gram negative | Bacteria | Aquatic | 4 | 0 |
| Fusarium moniliforme | 812 | Fungus | Fungi | Forest and wood samples | 1 | 0 |
| Fusarium oxysporum | 4287 | Filamentous fungus | Fungi | Soil | 8 | 1 |
| Fusarium oxysporum | MUCL 30736 | Fungus | Fungi | Soil | 4 | 0 |
| Fusarium solani | K37 | Filamentous fungus | Fungi | Soil | 1 | 0 |
| Fusarium solani | MUCL 35071 | Fungus | Fungi | Soil | 4 | 0 |
| Geotrichum klebahnii | CCY 74-6-2 | Yeast | Fungi | Soil | 1 | 0 |
| Haloarcula sp. | D1 | Archaea | Euryarchaeota | Aquatic | 2 | 1 |
| Haloferax sp. | D1227 | Archaea | Euryarchaeota | Soil | 3 | 0 |
| Haloferax sp. | C-24 | Archaea | Euryarchaeota | Industrial plants | 4 | 0 |
| Halorubrum ezzemoulense | C-46 | Archaea | Euryarchaeota | Industrial plants | 4 | 0 |
| Holophaga foetida | TMBS4 | Gram negative | Bacteria | Sediment | 3 | 0 |
| Hymenochaete yasudai | MAFF420327 | Fungus | Fungi | Forest and wood samples | 1 | 0 |
| Irpex lacteus | CD2 | White-rot fungus | Fungi | Forest and wood samples | 1 | 0 |
| Irpex lacteus | FP-101234 | White-rot fungus | Fungi | Forest and wood samples | 1 | 0 |
| Klebsiella pneumoniae | M5a1 | Gram negative | Bacteria | Soil | 5 | 1 |
| Klebsiella pneumoniae | NX-1(1) | Gram negative | Bacteria | Forest and wood samples | 1 | 0 |
| Klebsiella sp. | LLC-3 | Gram negative | Bacteria | Wastewater sludge | 2 | 0 |
| Klebsiella sp. | BRL6-2 | Gram negative | Bacteria | Soil | 1 | 0 |
| Leucosporidium scottii | G43 | Yeast | Fungi | Soil | 12 | 0 |
| Marasmius cryptomeriae | TUFC100845 | Fungus | Fungi | Forest and wood samples | 1 | 0 |
| Marinobacterium georgiense | KW-40 | Gram negative | Bacteria | Pulp and Paper Mill effluent | 7 | 0 |
| Mastigobasidium intermedium | PB8 | Fungus | Fungi | Caves and mines | 4 | 0 |
| Mesorhizobium sp. | PT04 | Gram negative | Bacteria | Sediment | 4 | 0 |
| Microbacterium esteraromaticum | Song isolate 5 | Gram positive | Bacteria | Forest and wood samples | 5 | 0 |
| Microbacterium phyllosphaerae | A1.1 | Unknown Gram stain | Bacteria | Soil | 3 | 0 |
| Microbotryomycetidae sp. | AG15 | Yeast | Fungi | Caves and mines | 4 | 0 |
| Microbulbifer hydrolyticus | IRE-31 | Gram negative | Bacteria | Pulp and Paper Mill effluent | 2 | 0 |
| Micrococcus luteus | E1.1 | Gram positive | Bacteria | Soil | 5 | 0 |
| Moraxella sp. | GU2 | Gram negative | Bacteria | Soil | 1 | 0 |
| Mycena haematopus | Hin 5 | Fungus | Fungi | Unknown or Not Specified | 1 | 0 |
| Natrialba sp. | C21 | Archaea | Euryarchaeota | Aquatic | 3 | 3 |
| Nematoloma frowardii | b19 | White-rot fungus | Fungi | Forest and wood samples | 1 | 0 |
| Nocardia corallina | A81 | Gram positive | Bacteria | Aquatic | 2 | 0 |
| Nocardia sp. | KD19 | Gram positive | Bacteria | Termite gut | 6 | 0 |
| Novosphingobium sp. | B-7 | Gram negative | Bacteria | Forest and wood samples | 1 | 0 |
| Novosphingobium taihuense | T3-B9 | Gram negative | Bacteria | Sediment | 7 | 0 |
| Oceanimonas doudoroffii | JCM21046T | Gram negative | Bacteria | Aquatic | 11 | 0 |
| Ochrobactrum anthropi | KD16 | Gram negative | Bacteria | Termite gut | 4 | 0 |
| Ochrobactrum oryzae | BMP03 | Gram negative | Bacteria | Termite gut | 2 | 0 |
| Ochrobactrum pseudogrignonense | A4.3 | Gram negative | Bacteria | Soil | 3 | 0 |
| Ochrobactrum rhizosphaerae | C4.1 | Gram negative | Bacteria | Soil | 2 | 0 |
| Ochrobactrum sp. | LLC-2 | Gram negative | Bacteria | Soil | 2 | 0 |
| Ochrobactrum tritici | NX-1(3) | Gram negative | Bacteria | Forest and wood samples | 1 | 0 |
| Oudemansiella venosolamellata | NBRC 104979 | Fungus | Fungi | Forest and wood samples | 1 | 0 |
| Paenibacillus glucanolyticus | SLM1 | Unknown Gram stain | Bacteria | Pulp and Paper Mill effluent | 9 | 0 |
| Paenibacillus sp. | ITRC S6 | Unknown Gram stain | Bacteria | Pulp and Paper Mill effluent | 1 | 0 |
| Paenibacillus sp. | JJ-1b | Gram positive | Bacteria | Sediment | 2 | 1 |
| Pandoraea norimbergensis | LD001 | Gram negative | Bacteria | Soil | 7 | 0 |
| Pandoraea sp. | ISTKB | Gram negative | Bacteria | Soil | 1 | 0 |
| Pandoraea sp. | B-6 | Gram negative | Bacteria | Forest and wood samples | 1 | 0 |
| Pantoea agglomerans | T71 | Gram negative | Bacteria | Soil | 1 | 0 |
| Pantoea dispersa | Song isolate 2 | Gram negative | Bacteria | Forest and wood samples | 7 | 0 |
| Pantoea sp. | Sd-1 | Gram negative | Bacteria | Seeds and hulls | 1 | 0 |
| Papillibacter cinnamivorans | CIN1 | Gram positive | Bacteria | Wastewater sludge | 2 | 0 |
| Paraburkholderia aromaticivorans | AR20-38 | Gram negative | Bacteria | Soil | 4 | 0 |
| Pelobacter acidigallici | Ma Gal2 (DSM 2377) | Gram negative | Bacteria | Sediment | 4 | 0 |
| Penicillium chrysogenum | MUCL 31363 | Fungus | Fungi | Soil | 7 | 0 |
| Pestalotia oxyanthi | MUCL 35070 | Fungus | Fungi | Soil | 3 | 0 |
| Petriellidium boydii | SP 31-4 | Soft-rot fungus | Fungi | Unknown or Not Specified | 2 | 0 |
| Phanerochaete chrysosporium | ATCC 34541 | White-rot fungus | Fungi | Forest and wood samples | 13 | 0 |
| Phanerochaete chrysosporium | BKM 1767 | White-rot fungus | Fungi | Forest and wood samples | 1 | 0 |
| Phanerochaete chrysosporium | ATCC 32629 | White-rot fungus | Fungi | Forest and wood samples | 1 | 0 |
| Phanerochaete chrysosporium | NRRL-6361 (ATCC 24725) | White-rot fungus | Fungi | Forest and wood samples | 1 | 0 |
| Phialophora mutabilis | 203-E-15-y-l | Soft-rot fungus | Fungi | Unknown or Not Specified | 2 | 0 |
| Phlebia brevispora | NRRL-13108 | White-rot fungus | Fungi | Unknown or Not Specified | 1 | 0 |
| Phlebia radiata | 79 | White-rot fungus | Fungi | Forest and wood samples | 1 | 0 |
| Phlebia radiata | K 233 | Fungus | Fungi | Unknown or Not Specified | 1 | 0 |
| Phlebia tremellosa | 79-16 | White-rot fungus | Fungi | Unknown or Not Specified | 1 | 0 |
| Phlebia tremellosa | MAFF420690 | Fungus | Fungi | Unknown or Not Specified | 1 | 0 |
| Phoma herbarum | Bi isolate | Fungus | Fungi | Soil | 2 | 0 |
| Pleurotus eryngii | DSM 9619 | Fungus | Fungi | Unknown or Not Specified | 1 | 0 |
| Polyporus compactus | NRRL-A-2351 | White-rot fungus | Fungi | Unknown or Not Specified | 1 | 0 |
| Pseudomonas aeruginosa | KMD3 | Gram negative | Bacteria | Termite gut | 7 | 0 |
| Pseudomonas alcaligenes | NCIMB 9867 | Gram negative | Bacteria | Sediment | 1 | 2 |
| Pseudomonas chlororaphis subsp. aureofaciens | PT02 | Gram negative | Bacteria | Soil | 9 | 0 |
| Pseudomonas citronellolis | KMA4 | Gram negative | Bacteria | Termite gut | 6 | 0 |
| Pseudomonas citronellolis | T8 | Gram negative | Bacteria | Soil | 1 | 0 |
| Pseudomonas fluorescens | AN103 | Gram negative | Bacteria | Soil | 7 | 1 |
| Pseudomonas fluorescens | PU1 | Gram negative | Bacteria | Soil | 1 | 1 |
| Pseudomonas fluorescens | DSM 50090 | Gram negative | Bacteria | Industrial plants | 4 | 0 |
| Pseudomonas mira | V2 | Gram negative | Bacteria | Soil | 3 | 0 |
| Pseudomonas ochraceae | NGJ1 | Gram negative | Bacteria | Soil | 0 | 1 |
| Pseudomonas plecoglossicida | G2 | Gram negative | Bacteria | Soil | 2 | 0 |
| Pseudomonas putida | KT2440 | Gram negative | Bacteria | Soil | 17 | 8 |
| Pseudomonas putida | F1 | Gram negative | Bacteria | Soil | 3 | 0 |
| Pseudomonas putida | Perestelo isolate 3 | Gram negative | Bacteria | Compost | 10 | 0 |
| Pseudomonas putida | NCIMB 9866 | Gram negative | Bacteria | Sediment | 1 | 1 |
| Pseudomonas putida | mt-2 | Gram negative | Bacteria | Soil | 3 | 1 |
| Pseudomonas putida | PRS2000 | Gram negative | Bacteria | Lab-made derivative | 2 | 4 |
| Pseudomonas putida | NX-1(2) | Gram negative | Bacteria | Forest and wood samples | 1 | 0 |
| Pseudomonas putida | ORC | Gram negative | Bacteria | Sediment | 4 | 2 |
| Pseudomonas sp. | HR199 | Gram negative | Bacteria | Soil | 7 | 0 |
| Pseudomonas sp. | Isolate 9.1 | Gram negative | Bacteria | Sediment | 7 | 0 |
| Pseudomonas sp. | SG-MS2 | Gram negative | Bacteria | Compost | 1 | 0 |
| Pseudomonas sp. | LLC-1 | Gram negative | Bacteria | Soil | 4 | 0 |
| Pseudomonas sp. | KF704 | Gram negative | Bacteria | Soil | 4 | 0 |
| Pseudomonas sp. | ITH-SA-1 | Gram negative | Bacteria | Aquatic | 1 | 0 |
| Pseudomonas sp. | MT1 | Gram negative | Bacteria | Sediment | 2 | 1 |
| Pseudomonas stutzeri | A1501 | Gram negative | Bacteria | Soil | 1 | 1 |
| Pycnoporus cinnabarinus | ATCC 200478 | Fungus | Fungi | Forest and wood samples | 1 | 0 |
| Pycnoporus cinnabarinus | FP-104138 | White-rot fungus | Fungi | Forest and wood samples | 1 | 0 |
| Pycnoporus sanguineus | FP-103506 | White-rot fungus | Fungi | Forest and wood samples | 1 | 0 |
| Rhizobium sp. | YS-1r | Gram negative | Bacteria | Compost | 12 | 0 |
| Rhodococcus erythropolis | A5.1 | Gram positive | Bacteria | Soil | 5 | 0 |
| Rhodococcus erythropolis | TA421 | Gram positive | Bacteria | Termite gut | 6 | 0 |
| Rhodococcus erythropolis | 1CP | Gram positive | Bacteria | Unknown or Not Specified | 4 | 1 |
| Rhodococcus fascians | AY730713 | Gram positive | Bacteria | Forest and wood samples | 8 | 1 |
| Rhodococcus fascians | Song isolate 3 | Gram positive | Bacteria | Forest and wood samples | 8 | 0 |
| Rhodococcus jostii | RHA1 | Gram positive | Bacteria | Soil | 11 | 2 |
| Rhodococcus opacus | DSM 1069 | Gram positive | Bacteria | Soil | 12 | 1 |
| Rhodococcus opacus | PD630 (DSMZ 44193) | Gram positive | Bacteria | Soil | 7 | 8 |
| Rhodococcus pyridinivorans | CCZU-B16 | Gram positive | Bacteria | Soil | 1 | 0 |
| Rhodococcus rhodochrous | 116 | Gram positive | Bacteria | Soil | 13 | 0 |
| Rhodococcus sp. | UKMP-5M | Gram positive | Bacteria | Soil | 6 | 0 |
| Rhodopseudomonas palustris | CGA009 | Gram negative | Bacteria | Lab-made derivative | 4 | 0 |
| Rhodopseudomonas palustris | CGA001 | Gram negative | Bacteria | Unknown or Not Specified | 16 | 0 |
| Rhodosporidiobolus colostri | DBVPG 10655 | Yeast | Fungi | Soil | 4 | 0 |
| Rhodosporidium lusitaniae | PB14 | Yeast | Fungi | Caves and mines | 5 | 0 |
| Rhodosporidium toruloides | IFO0880 | Yeast | Fungi | Unknown or Not Specified | 5 | 0 |
| Rhodotorula sp. | R2 | Yeast | Fungi | Unknown or Not Specified | 4 | 0 |
| Rhodotorula creatinivora | PB7 | Yeast | Fungi | Caves and mines | 7 | 0 |
| Rhodotorula glutinis | Jain isolate | Yeast | Fungi | Soil | 4 | 0 |
| Rhodotorula graminis | WP1 | Yeast | Fungi | Soil | 7 | 1 |
| Rhodotorula ingeniosa | PB5 | Yeast | Fungi | Soil | 6 | 0 |
| Rhodotorula mucilaginosa | CBS17 | Yeast | Fungi | Unknown or Not Specified | 7 | 1 |
| Rhodotorula rubra | IFO 889 | Yeast | Fungi | Unknown or Not Specified | 4 | 2 |
| Rhodotorula vanillica | IGC 4506 | Yeast | Fungi | Aquatic | 4 | 0 |
| Rigidoporus lineatus | ES-500 | White-rot fungus | Fungi | Forest and wood samples | 1 | 0 |
| Sagittula stellata | ATCC 700073 | Gram negative | Bacteria | Pulp and Paper Mill effluent | 1 | 0 |
| Serratia liquefaciens | LD-5 | Gram negative | Bacteria | Pulp and Paper Mill effluent | 2 | 0 |
| Serratia liquefaciens sp. | PT01 | Gram negative | Bacteria | Soil | 8 | 0 |
| Serratia marcescens | C5 | Gram negative | Bacteria | Forest and wood samples | 7 | 0 |
| Serratia marcescens | Perestelo isolate 2 | Gram negative | Bacteria | Compost | 2 | 0 |
| Serratia sp. | JHT01 | Gram negative | Bacteria | Soil | 8 | 0 |
| Sinorhizobium meliloti | Rm1021 | Gram negative | Bacteria | Soil | 1 | 1 |
| Sphingobacterium sp. | T2 | Gram negative | Bacteria | Soil | 4 | 0 |
| Sphingobium sp. | SYK-6 | Gram negative | Bacteria | Pulp and Paper Mill effluent | 13 | 7 |
| Sphingomonas aromaticivorans | F199 | Gram negative | Bacteria | Caves and mines | 7 | 0 |
| Sporobolomyces roseus | AG13 | Fungus | Fungi | Other | 2 | 0 |
| Stenotrophomonas sp. | PT03 | Gram negative | Bacteria | Soil | 5 | 0 |
| Streptomyces badius | ATCC 39117 | Gram positive | Bacteria | Soil | 2 | 0 |
| Streptomyces coelicolor | A3(2) M600 | Gram positive | Bacteria | Soil | 2 | 1 |
| Streptomyces sp. | D7 | Gram positive | Bacteria | Soil | 1 | 0 |
| Streptomyces sp. | F-6 | Gram positive | Bacteria | Soil | 1 | 0 |
| Streptomyces sp. | WA46 | Gram positive | Bacteria | Soil | 1 | 2 |
| Streptomyces sp. | CA2 | Gram positive | Bacteria | Termite gut | 1 | 0 |
| Streptomyces sp. | ZC2 | Gram positive | Bacteria | Termite gut | 3 | 0 |
| Streptomyces sp. | KS1025A | Gram positive | Bacteria | Soil | 1 | 0 |
| Streptomyces viridosporus | T7A | Gram positive | Bacteria | Soil | 6 | 1 |
| Stropharia rugosoannulata | Zi297 | Fungus | Fungi | Unknown or Not Specified | 1 | 0 |
| Stropharia rugosoannulata | TUFC30865 | Fungus | Fungi | Unknown or Not Specified | 1 | 0 |
| Sulfuritalea hydrogenivorans | sk43H | Gram negative | Bacteria | Aquatic | 4 | 0 |
| Thauera aromatica | K172 | Gram negative | Bacteria | Wastewater sludge | 15 | 0 |
| Thauera sp. | Cin3,4 | Gram negative | Bacteria | Wastewater sludge | 12 | 0 |
| Thermobifida fusca | NBRC 14071T | Gram positive | Bacteria | Soil | 1 | 0 |
| Thermomonospora mesophila | DSM 43048 | Gram positive | Bacteria | Soil | 2 | 0 |
| Tolumonas lignolytica | BRL6-1 | Gram negative | Bacteria | Soil | 1 | 0 |
| Trabulsiella sp. | IIPTG13 | Gram negative | Bacteria | Termite gut | 2 | 0 |
| Trametes gibbosa | BEOFB 310 | Fungus | Fungi | Forest and wood samples | 1 | 0 |
| Trametes versicolor | Strain 1 | White-rot fungus | Fungi | Pulp and Paper Mill effluent | 2 | 1 |
| Trametes versicolor | NBRC 104985 | Fungus | Fungi | Forest and wood samples | 1 | 0 |
| Treponema primitia | ZAS-1 | Gram negative | Bacteria | Termite gut | 4 | 1 |
| Trichoderma asperellum | MG-97/6 | Fungus | Fungi | Soil | 1 | 0 |
| Trichoderma harzianum | BsIII33 | Fungus | Fungi | Soil | 1 | 0 |
| Trichoderma reesei | QM6a | Filamentous fungus | Fungi | Soil | 1 | 0 |
| Trichosporon cutaneum | CBS2466 | Yeast (oleaginous) | Fungi | Clinical isolate | 8 | 1 |
| Trichosporon mucoides | SBUG 80 | Yeast | Fungi | Soil | 3 | 0 |
| Trichosporon oleaginosus | ATCC 20509 | Yeast (oleaginous) | Fungi | Industrial plants | 3 | 0 |
| Trichosporon pullulans | CCY 30-1-10 | Yeast | Fungi | Soil | 1 | 0 |