Treponema primitia ZAS-1
- Kingdom
- Bacteria
- Phylum
- Spirochaetes
- Class
- -
- Type
- Gram negative
- Strain
- ZAS-1
- Origin (Details)
- Termite gut (<i>Zootermopsis angusticollis</i>)
- Origin (Category)
- Termite gut
- Genome Sequenced
- Yes; GenBank: AEEA00000000.1
Utilizible (lignin-derived) carbon sources (4) Empirical
NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".
| Substrate | Reference(s) | Comment(s) |
|---|---|---|
| caffeic acid | Lucey et al (2013) | - |
| catechol | Lucey et al (2013) | - |
| hydrocaffeic acid | Lucey et al (2013) | - |
| protocatechuic acid | Lucey et al (2013) | - |
Pathways (1) Empirical
| Pathway Name | Reference(s) |
|---|---|
| catechol meta-cleavage | Lucey et al (2013) |
Enzymes (0) Empirical
No enzymes listed for this organism.
Transporters (0) Empirical
No transporters listed for this organism.
Genes (0) Empirical
No genes listed for this organism.
Predicted pathways in Treponema primitia ZAS-1 Predicted
Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?
| Predicted pathway | Funneling branch | Inferred via substrate | Reference |
|---|---|---|---|
| beta-ketoadipate (all branches) | beta-ketoadipate branch | catechol, protocatechuic acid | Lucey et al (2013) |
| beta-ketoadipate: Catechol branch | beta-ketoadipate branch | catechol | Lucey et al (2013) |
| beta-ketoadipate: Protocatechuate branch | beta-ketoadipate branch | protocatechuic acid | Lucey et al (2013) |
| caffeic acid | caffeic acid branch | caffeic acid | Lucey et al (2013) |
| protocatechuate 2,3-cleavage | protocatechuate 2,3-cleavage branch | protocatechuic acid | Lucey et al (2013) |
| protocatechuate 4,5-cleavage | beta-ketoadipate branch | protocatechuic acid | Lucey et al (2013) |
Predicted enzymes in Treponema primitia ZAS-1 Predicted
Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?
Culture Collections
No culture collection information available for this organism.
Genome Sequencing
| Strain | Status | Reference |
|---|---|---|
| ZAS-1 | Yes; GenBank: AEEA00000000.1 | - |
Other Databases
| Database | Comment |
|---|---|
| PATRIC | Genome sequence database |
| NCBI Taxonomy | Taxonomy database |