The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Comamonas testosteroni BR6020

Kingdom
Bacteria
Phylum
Proteobacteria
Class
Beta-proteobacteria
Type
Gram negative
Strain
BR6020
Origin (Details)
Plasmid-free derivative of C. testosteroni BR60
Origin (Category)
Lab-made derivative
Genome Sequenced
-
Synonyms
Pseudomonas testosteroni
Empirical Data

Utilizible (lignin-derived) carbon sources (12) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
3-hydroxybenzoic acid Providenti et al (2001) -
4-hydroxybenzoic acid Providenti et al (2001) -
benzoic acid Providenti et al (2001) -
isovanillic acid Providenti et al (2006) -
naphthalene Providenti et al (2001) -
phenanthrene Providenti et al (2001) -
phenol Providenti et al (2001) -
phthalic acid Providenti et al (2001) -
protocatechuic acid Providenti et al (2006) -
pyrene Providenti et al (2001) -
vanillic acid Providenti et al (2006) -
veratric acid Providenti et al (2006) -

Pathways (1) Empirical

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Pathway Name Reference(s)
protocatechuate 4,5-cleavage Providenti et al (2001)

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Comamonas testosteroni BR6020 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
benzoic acid benzoyl branch benzoic acid Providenti et al (2001)
beta-ketoadipate (all branches) beta-ketoadipate branch protocatechuic acid Providenti et al (2006)
beta-ketoadipate: Protocatechuate branch beta-ketoadipate branch protocatechuic acid Providenti et al (2006)
guaiacol coniferyl branch vanillic acid Providenti et al (2006)
m-cresol gentisate branch 3-hydroxybenzoic acid Providenti et al (2001)
p-coumaric acid p-coumaric branch 4-hydroxybenzoic acid Providenti et al (2001)
phenol phenol branch phenol Providenti et al (2001)
protocatechuate 2,3-cleavage protocatechuate 2,3-cleavage branch protocatechuic acid Providenti et al (2006)
vanillin I coniferyl branch vanillic acid Providenti et al (2006)
vanillin II coniferyl branch vanillic acid Providenti et al (2006)

Predicted enzymes in Comamonas testosteroni BR6020 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme Inferred via pathway Reference
2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase protocatechuate 4,5-cleavage Providenti et al (2001)
2-pyrone-4,6-dicarboxylate hydrolase protocatechuate 4,5-cleavage Providenti et al (2001)
2-pyrone-4,6-dicarboxylate lactonase protocatechuate 4,5-cleavage Providenti et al (2001)
4-oxalmesaconate hydratase protocatechuate 4,5-cleavage Providenti et al (2001)
4-oxalomesaconate tautomerase protocatechuate 4,5-cleavage Providenti et al (2001)
HMG aldolase protocatechuate 4,5-cleavage Providenti et al (2001)
oxaloacetate decarboxylase protocatechuate 4,5-cleavage Providenti et al (2001)
protocatechuate 4,5-dioxygenase protocatechuate 4,5-cleavage Providenti et al (2001)

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

No genome sequencing information available for this organism.

Other Databases

Database Comment
NCBI Taxonomy Taxonomy database

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