The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Agrobacterium tumefaciens B6

Kingdom
Bacteria
Phylum
Proteobacteria
Class
Alpha-proteobacteria
Type
Gram negative
Strain
B6
Origin (Details)
Soil
Origin (Category)
Soil
Genome Sequenced
Yes, Strain C58
Synonyms
Agrobacterium radiobacter
Rhizobium radiobacter
Empirical Data

Utilizible (lignin-derived) carbon sources (1) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
4-hydroxybenzoic acid Parke (1997) -

Pathways (1) Empirical

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Pathway Name Reference(s)
beta-ketoadipate (all branches) Parke et al (1986)

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Agrobacterium tumefaciens B6 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
p-coumaric acid p-coumaric branch 4-hydroxybenzoic acid Parke (1997)

Predicted enzymes in Agrobacterium tumefaciens B6 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme Inferred via pathway Reference
3-carboxy-cis,cis-muconate cycloisomerase beta-ketoadipate (all branches) Parke et al (1986)
3-oxoadipate enol-lactonase beta-ketoadipate (all branches) Parke et al (1986)
4-carboxymuconolactone decarboxylase beta-ketoadipate (all branches) Parke et al (1986)
Protocatechuate 3,4-dioxygenase beta-ketoadipate (all branches) Parke et al (1986)
catechol 1,2-dioxygenase beta-ketoadipate (all branches) Parke et al (1986)
muconate cycloisomerase beta-ketoadipate (all branches) Parke et al (1986)
muconolactone isomerase beta-ketoadipate (all branches) Parke et al (1986)

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

Strain Status Reference
B6 Yes, Strain C58 Goodner et al (2001)

Other Databases

Database Comment
NCBI Taxonomy Taxonomy database

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