The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Fusarium oxysporum 4287

Kingdom
Fungi
Phylum
Ascomycota
Class
-
Type
Filamentous fungus
Strain
4287
Origin (Details)
Soil
Origin (Category)
Soil
Genome Sequenced
Yes
Empirical Data

Utilizible (lignin-derived) carbon sources (8) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
4-chlorocatechol Rodriguez et al (1996) -
4-hydroxybenzaldehyde Michielse et al (2012) -
4-hydroxybenzoic acid Michielse et al (2012) -
catechol Michielse et al (2012) -
cinnamic acid Michielse et al (2012) -
ferulic acid Michielse et al (2012) -
p-coumaric acid Michielse et al (2012) -
vanillic acid Michielse et al (2012) -

Pathways (1) Empirical

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Pathway Name Reference(s)
beta-ketoadipate (all branches) Michielse et al (2012)

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Fusarium oxysporum 4287 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
beta-ketoadipate: Catechol branch beta-ketoadipate branch catechol Michielse et al (2012)
catechol meta-cleavage catechol meta-cleavage branch catechol Michielse et al (2012)
ferulic acid coniferyl branch ferulic acid Michielse et al (2012)
guaiacol coniferyl branch vanillic acid Michielse et al (2012)
p-coumaric acid p-coumaric branch 4-hydroxybenzaldehyde, 4-hydroxybenzoic acid, p-coumaric acid Michielse et al (2012)
vanillin I coniferyl branch vanillic acid Michielse et al (2012)
vanillin II coniferyl branch vanillic acid Michielse et al (2012)

Predicted enzymes in Fusarium oxysporum 4287 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme Inferred via pathway Reference
3-carboxy-cis,cis-muconate cycloisomerase beta-ketoadipate (all branches) Michielse et al (2012)
3-oxoadipate enol-lactonase beta-ketoadipate (all branches) Michielse et al (2012)
4-carboxymuconolactone decarboxylase beta-ketoadipate (all branches) Michielse et al (2012)
Protocatechuate 3,4-dioxygenase beta-ketoadipate (all branches) Michielse et al (2012)
catechol 1,2-dioxygenase beta-ketoadipate (all branches) Michielse et al (2012)
muconate cycloisomerase beta-ketoadipate (all branches) Michielse et al (2012)
muconolactone isomerase beta-ketoadipate (all branches) Michielse et al (2012)

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

Strain Status Reference
4287 Yes Ma et al (2010)

Other Databases

Database Comment
NCBI Taxonomy Taxonomy database

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