The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Rhodotorula mucilaginosa CBS17

Kingdom
Fungi
Phylum
Basidiomycota
Class
-
Type
Yeast
Strain
CBS17
Origin (Details)
Unknown (origin of isolation not listed at ATCC)
Origin (Category)
Unknown or Not Specified
Genome Sequenced
Yes, strain C2.5t1
Synonyms
Rhodotorula rubra
Empirical Data

Utilizible (lignin-derived) carbon sources (7) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
3-hydroxybenzoic acid Sampaio (1999) -
4-hydroxybenzoic acid Sampaio (1999) -
caffeic acid Sampaio (1999) -
ferulic acid Sampaio (1999) -
p-coumaric acid Sampaio (1999) -
protocatechuic acid Sampaio (1999) -
vanillic acid Sampaio (1999) -

Pathways (1) Empirical

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Pathway Name Reference(s)
beta-ketoadipate (all branches) COOK et al (1974)

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Rhodotorula mucilaginosa CBS17 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
beta-ketoadipate: Protocatechuate branch beta-ketoadipate branch protocatechuic acid Sampaio (1999)
caffeic acid caffeic acid branch caffeic acid Sampaio (1999)
ferulic acid coniferyl branch ferulic acid Sampaio (1999)
guaiacol coniferyl branch vanillic acid Sampaio (1999)
m-cresol gentisate branch 3-hydroxybenzoic acid Sampaio (1999)
p-coumaric acid p-coumaric branch 4-hydroxybenzoic acid, p-coumaric acid Sampaio (1999)
protocatechuate 2,3-cleavage protocatechuate 2,3-cleavage branch protocatechuic acid Sampaio (1999)
protocatechuate 4,5-cleavage beta-ketoadipate branch protocatechuic acid Sampaio (1999)
vanillin I coniferyl branch vanillic acid Sampaio (1999)
vanillin II coniferyl branch vanillic acid Sampaio (1999)

Predicted enzymes in Rhodotorula mucilaginosa CBS17 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme Inferred via pathway Reference
3-carboxy-cis,cis-muconate cycloisomerase beta-ketoadipate (all branches) COOK et al (1974)
3-oxoadipate enol-lactonase beta-ketoadipate (all branches) COOK et al (1974)
4-carboxymuconolactone decarboxylase beta-ketoadipate (all branches) COOK et al (1974)
Protocatechuate 3,4-dioxygenase beta-ketoadipate (all branches) COOK et al (1974)
catechol 1,2-dioxygenase beta-ketoadipate (all branches) COOK et al (1974)
muconate cycloisomerase beta-ketoadipate (all branches) COOK et al (1974)
muconolactone isomerase beta-ketoadipate (all branches) COOK et al (1974)

Culture Collections

Strain Depository ID
CBS17 CBS17

Genome Sequencing

Strain Status Reference
CBS17 Yes Deligios et al (2015)

Other Databases

No external database links are available for this organism.

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