Amycolatopsis sp. 75iv2 (ATCC 39116)

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Amycolatopsis sp. 75iv2 (ATCC 39116)

Kingdom: Bacteria
Phylum: Actinobacteria
Class: -
Type: Gram positive
Strain: 75iv2 (ATCC 39116)
Origin (Details): Isolated from soil by D. L. Sinden (M.S.thesis,University of Idaho, Moscow,1979)
Origin (Category): Soil
Genome Sequenced: Yes
Synonyms: Streptomyces setonii
Streptomyces griseus
Streptomyces cavourensis subsp. washingtonensis

Utilizible (lignin-derived) carbon sources (21) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate	Reference(s)	Comment(s)
3-hydroxybenzoic acid	Pometto III et al (1981)	-
4-hydroxybenzaldehyde	Sutherland et al (1983)	-
4-hydroxybenzoic acid	Pometto III et al (1981) Sutherland et al (1983)	-
agropyron repens grass lignin	Antai et al (1981)	-
alkali lignin	Salvachúa et al (2015)	(from corn stover; ~30% lignin conversion, including Klason lignin and monomers)
benzaldehyde	Sutherland et al (1983)	-
benzoic acid	Davis et al (2012) Pometto III et al (1981) Barton et al (2018)	-
catechol	Davis et al (2012) Pometto III et al (1981) Antai et al (1983) Barton et al (2018)	-
cinnamic acid	Sutherland et al (1983) Barton et al (2018)	-
cis,cis-muconic acid	Antai et al (1983) Barton et al (2018)	-
ferulic acid	Davis et al (2012) Fleige et al (2013) Sutherland et al (1983)	-
gentisic acid	Davis et al (2012) Pometto III et al (1981)	-
guaiacol	Davis et al (2012) Pometto III et al (1981) Sutherland et al (1983) Barton et al (2018)	-
maple lignin	Antai et al (1981)	-
p-coumaric acid	Davis et al (2012) Sutherland et al (1983) Barton et al (2018)	-
phenol	Antai et al (1983) Barton et al (2018)	-
protocatechuic acid	Davis et al (2012) Pometto III et al (1981)	-
spruce lignin	Antai et al (1981)	-
vanillic acid	Pometto III et al (1981) Sutherland et al (1983)	-
vanillin	Davis et al (2012) Sutherland et al (1983)	-
veratrole	Sutherland (1986)	-

Pathways (5) Empirical

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Pathway Name	Reference(s)
benzoic acid	Sutherland et al (1983)
beta-ketoadipate (all branches)	Sutherland (1986)
ferulic acid	Sutherland et al (1983)
guaiacol	Sutherland et al (1983)
p-coumaric acid	Sutherland et al (1983)

Enzymes (1) Empirical

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Enzyme	Gene(s)	Reference(s)
P450 aryl-O-demethylase	Am_GcoAB	Mallinson et al (2018)

Transporters (0) Empirical

No transporters listed for this organism.

Genes (1) Empirical

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Gene Name	Reference(s)
Am_GcoAB	Mallinson et al (2018)

Predicted pathways in Amycolatopsis sp. 75iv2 (ATCC 39116) Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway	Funneling branch	Inferred via substrate	Reference
beta-ketoadipate: Catechol branch	beta-ketoadipate branch	catechol, cis,cis-muconic acid	Davis et al (2012), Pometto III et al (1981), Antai et al (1983), Barton et al (2018)
beta-ketoadipate: Protocatechuate branch	beta-ketoadipate branch	protocatechuic acid	Davis et al (2012), Pometto III et al (1981)
catechol meta-cleavage	catechol meta-cleavage branch	catechol	Davis et al (2012), Pometto III et al (1981), Antai et al (1983), Barton et al (2018)
gentisate-cleavage	gentisate branch	gentisic acid	Davis et al (2012), Pometto III et al (1981)
m-cresol	gentisate branch	3-hydroxybenzoic acid	Pometto III et al (1981)
phenol	phenol branch	phenol	Antai et al (1983), Barton et al (2018)
protocatechuate 2,3-cleavage	protocatechuate 2,3-cleavage branch	protocatechuic acid	Davis et al (2012), Pometto III et al (1981)
protocatechuate 4,5-cleavage	beta-ketoadipate branch	protocatechuic acid	Davis et al (2012), Pometto III et al (1981)
vanillin I	coniferyl branch	vanillic acid, vanillin	Pometto III et al (1981), Sutherland et al (1983), Davis et al (2012)
vanillin II	coniferyl branch	vanillic acid, vanillin	Pometto III et al (1981), Sutherland et al (1983), Davis et al (2012)

Predicted enzymes in Amycolatopsis sp. 75iv2 (ATCC 39116) Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme	Inferred via pathway	Reference
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase	benzoic acid	Sutherland et al (1983)
3-carboxy-cis,cis-muconate cycloisomerase	beta-ketoadipate (all branches)	Sutherland (1986)
3-oxoadipate enol-lactonase	beta-ketoadipate (all branches)	Sutherland (1986)
4-carboxymuconolactone decarboxylase	beta-ketoadipate (all branches)	Sutherland (1986)
4-hydroxybenzaldehyde dehydrogenase	p-coumaric acid	Sutherland et al (1983)
4-hydroxybenzoate 3-monooxygenase	p-coumaric acid	Sutherland et al (1983)
Benzoate 1,2-dioxygenase	benzoic acid	Sutherland et al (1983)
Feruloyl-CoA synthase	ferulic acid	Sutherland et al (1983)
Protocatechuate 3,4-dioxygenase	beta-ketoadipate (all branches)	Sutherland (1986)
caffeate coenzyme A ligase	p-coumaric acid	Sutherland et al (1983)
catechol 1,2-dioxygenase	beta-ketoadipate (all branches)	Sutherland (1986)
enoyl-CoA hydratase/lyase	p-coumaric acid	Sutherland et al (1983)
muconate cycloisomerase	beta-ketoadipate (all branches)	Sutherland (1986)
muconolactone isomerase	beta-ketoadipate (all branches)	Sutherland (1986)
non-oxidative vanillate decarboxylase	guaiacol	Sutherland et al (1983)
trans-feruloyl-CoA hydratase	ferulic acid	Sutherland et al (1983)

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

No genome sequencing information available for this organism.

Other Databases

Database	Comment
GenBank	Genome sequence database
NCBI Taxonomy	Taxonomy database
NCBI Taxonomy	Taxonomy database