Paenibacillus sp. JJ-1b
- Kingdom
- Bacteria
- Phylum
- Firmicutes
- Class
- -
- Type
- Gram positive
- Strain
- JJ-1b
- Origin (Details)
- 50°,C hot spring
- Origin (Category)
- Sediment
- Genome Sequenced
- -
Utilizible (lignin-derived) carbon sources (2) Empirical
NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".
| Substrate | Reference(s) | Comment(s) |
|---|---|---|
| 4-hydroxybenzoic acid | Crawford et al (1979) | - |
| protocatechuic acid | Kasai et al (2009) | - |
Pathways (1) Empirical
| Pathway Name | Reference(s) |
|---|---|
| protocatechuate 2,3-cleavage | Kasai et al (2009) |
Enzymes (5) Empirical
| Enzyme | Gene(s) | Reference(s) |
|---|---|---|
| 2-hydroxymuconate-6-semialdehyde dehydrogenase | - | - |
| 2-oxo-3-hexenedioate decarboxylase | - | - |
| 4-hydroxybenzoate 3-monooxygenase | Pae_praI | Kasai et al (2009) |
| 4-oxalocrotonate tautomerase | - | - |
| protocatechuate 2,3-dioxygenase | - | - |
Transporters (0) Empirical
No transporters listed for this organism.
Genes (5) Empirical
| Gene Name | Reference(s) |
|---|---|
| Pae_praA | Kasai et al (2009) |
| Pae_praB | Kasai et al (2009) |
| Pae_praC | - |
| Pae_praD | - |
| Pae_praI | Kasai et al (2009) |
Predicted pathways in Paenibacillus sp. JJ-1b Predicted
Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?
| Predicted pathway | Funneling branch | Inferred via substrate | Reference |
|---|---|---|---|
| beta-ketoadipate (all branches) | beta-ketoadipate branch | protocatechuic acid | Kasai et al (2009) |
| beta-ketoadipate: Protocatechuate branch | beta-ketoadipate branch | protocatechuic acid | Kasai et al (2009) |
| p-coumaric acid | p-coumaric branch | 4-hydroxybenzoic acid | Crawford et al (1979) |
| protocatechuate 4,5-cleavage | beta-ketoadipate branch | protocatechuic acid | Kasai et al (2009) |
Predicted enzymes in Paenibacillus sp. JJ-1b Predicted
Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?
| Predicted enzyme | Inferred via pathway | Reference |
|---|---|---|
| 2-oxopent-4-enoate hydratase | protocatechuate 2,3-cleavage | Kasai et al (2009) |
| 4-hydroxy-2-oxovalerate aldolase | protocatechuate 2,3-cleavage | Kasai et al (2009) |
Culture Collections
No culture collection information available for this organism.
Genome Sequencing
No genome sequencing information available for this organism.
Other Databases
| Database | Comment |
|---|---|
| NCBI Taxonomy | Taxonomy database |