Holophaga foetida TMBS4
- Kingdom
- Bacteria
- Phylum
- Acidobacteria
- Class
- -
- Type
- Gram negative
- Strain
- TMBS4
- Origin (Details)
- Black anoxic freshwater mud from a ditch near Konstanz,Germany
- Origin (Category)
- Sediment
- Genome Sequenced
- -
Utilizible (lignin-derived) carbon sources (5) Empirical
NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".
| Substrate | Reference(s) | Comment(s) |
|---|---|---|
| 4-hydroxybenzoylformate (intermediate) | Bak et al (1993) | (anaerobically) |
| 4-phenylbutyrate (intermediate) | Bak et al (1993) | (anaerobically) |
| ferulic acid | Bak et al (1993) | (anaerobically) |
| gallic acid | Bak et al (1993) | (anaerobically) |
| syringic acid | Bak et al (1993) | (anaerobically) |
Pathways (0) Empirical
No pathways listed for this organism.
Enzymes (0) Empirical
No enzymes listed for this organism.
Transporters (0) Empirical
No transporters listed for this organism.
Genes (0) Empirical
No genes listed for this organism.
Predicted pathways in Holophaga foetida TMBS4 Predicted
Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?
| Predicted pathway | Funneling branch | Inferred via substrate | Reference |
|---|---|---|---|
| ferulic acid | coniferyl branch | ferulic acid | Bak et al (1993) |
| syringic acid I | sinapyl branch | gallic acid, syringic acid | Bak et al (1993) |
| syringic acid II | sinapyl branch | syringic acid | Bak et al (1993) |
| syringic acid III | sinapyl branch | syringic acid | Bak et al (1993) |
Predicted enzymes in Holophaga foetida TMBS4 Predicted
Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?
No enzymes predicted from confirmed pathways for this organism.
Culture Collections
No culture collection information available for this organism.
Genome Sequencing
No genome sequencing information available for this organism.
Other Databases
| Database | Comment |
|---|---|
| NCBI Taxonomy | Taxonomy database |