Rhodococcus sp. UKMP-5M
- Kingdom
- Bacteria
- Phylum
- Actinobacteria
- Class
- -
- Type
- Gram positive
- Strain
- UKMP-5M
- Origin (Details)
- Petroleum contaminated soil at an oil refinery in Malacca, Malaysia.
- Origin (Category)
- Soil
- Genome Sequenced
- -
Utilizible (lignin-derived) carbon sources (6) Empirical
NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".
| Substrate | Reference(s) | Comment(s) |
|---|---|---|
| kraft lignin | Azman (2015) | - |
| miscanthus grass lignin (ionic liquid pretreated) | Azman (2015) | - |
| phenol | Suhaila et al (2013) | - |
| protocatechuic acid | Azman (2015) | - |
| vanillic acid | Azman (2015) | - |
| vanillin | Azman (2015) | - |
Pathways (0) Empirical
No pathways listed for this organism.
Enzymes (0) Empirical
No enzymes listed for this organism.
Transporters (0) Empirical
No transporters listed for this organism.
Genes (0) Empirical
No genes listed for this organism.
Predicted pathways in Rhodococcus sp. UKMP-5M Predicted
Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?
| Predicted pathway | Funneling branch | Inferred via substrate | Reference |
|---|---|---|---|
| beta-ketoadipate (all branches) | beta-ketoadipate branch | protocatechuic acid | Azman (2015) |
| beta-ketoadipate: Protocatechuate branch | beta-ketoadipate branch | protocatechuic acid | Azman (2015) |
| guaiacol | coniferyl branch | vanillic acid | Azman (2015) |
| phenol | phenol branch | phenol | Suhaila et al (2013) |
| protocatechuate 2,3-cleavage | protocatechuate 2,3-cleavage branch | protocatechuic acid | Azman (2015) |
| protocatechuate 4,5-cleavage | beta-ketoadipate branch | protocatechuic acid | Azman (2015) |
| vanillin I | coniferyl branch | vanillic acid, vanillin | Azman (2015) |
| vanillin II | coniferyl branch | vanillic acid, vanillin | Azman (2015) |
Predicted enzymes in Rhodococcus sp. UKMP-5M Predicted
Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?
No enzymes predicted from confirmed pathways for this organism.
Culture Collections
No culture collection information available for this organism.
Genome Sequencing
No genome sequencing information available for this organism.
Other Databases
| Database | Comment |
|---|---|
| NCBI Taxonomy | Taxonomy database |