Pseudomonas putida F1
- Kingdom
- Bacteria
- Phylum
- Proteobacteria
- Class
- Gamma-proteobacteria
- Type
- Gram negative
- Strain
- F1
- Origin (Details)
- Soil (According to ATCC)
- Origin (Category)
- Soil
- Genome Sequenced
- -
- Synonyms
- Pseudomonas arvilla
Utilizible (lignin-derived) carbon sources (3) Empirical
NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".
| Substrate | Reference(s) | Comment(s) |
|---|---|---|
| ferulic acid | Hirose et al (2013) | - |
| vanillic acid | Hirose et al (2013) | - |
| vanillin | Hirose et al (2013) | - |
Pathways (0) Empirical
No pathways listed for this organism.
Enzymes (0) Empirical
No enzymes listed for this organism.
Transporters (0) Empirical
No transporters listed for this organism.
Genes (0) Empirical
No genes listed for this organism.
Predicted pathways in Pseudomonas putida F1 Predicted
Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?
| Predicted pathway | Funneling branch | Inferred via substrate | Reference |
|---|---|---|---|
| ferulic acid | coniferyl branch | ferulic acid | Hirose et al (2013) |
| guaiacol | coniferyl branch | vanillic acid | Hirose et al (2013) |
| vanillin I | coniferyl branch | vanillic acid, vanillin | Hirose et al (2013) |
| vanillin II | coniferyl branch | vanillic acid, vanillin | Hirose et al (2013) |
Predicted enzymes in Pseudomonas putida F1 Predicted
Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?
No enzymes predicted from confirmed pathways for this organism.
Culture Collections
| Strain | Depository ID |
|---|---|
| F1 | ATCC 700007 |
Genome Sequencing
No genome sequencing information available for this organism.
Other Databases
| Database | Comment |
|---|---|
| NCBI Taxonomy | Taxonomy database |