The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Streptomyces viridosporus T7A

Kingdom
Bacteria
Phylum
Actinobacteria
Class
-
Type
Gram positive
Strain
T7A
Origin (Details)
Isolated from soil by D. L. Sinden (M.S.thesis,University of Idaho, Moscow,1979)
Origin (Category)
Soil
Genome Sequenced
Yes
Empirical Data

Utilizible (lignin-derived) carbon sources (6) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
agropyron repens grass lignin Antai et al (1981) -
gentisic acid Zeng et al (2012) -
maple lignin Antai et al (1981) -
protocatechuic acid Davis et al (2013) -
spruce lignin Antai et al (1981) -
vanillin Pometto et al (1983) -

Pathways (1) Empirical

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Pathway Name Reference(s)
beta-ketoadipate (all branches) Davis et al (2009)

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Streptomyces viridosporus T7A Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
beta-ketoadipate: Protocatechuate branch beta-ketoadipate branch protocatechuic acid Davis et al (2013)
gentisate-cleavage gentisate branch gentisic acid Zeng et al (2012)
protocatechuate 2,3-cleavage protocatechuate 2,3-cleavage branch protocatechuic acid Davis et al (2013)
protocatechuate 4,5-cleavage beta-ketoadipate branch protocatechuic acid Davis et al (2013)
vanillin I coniferyl branch vanillin Pometto et al (1983)
vanillin II coniferyl branch vanillin Pometto et al (1983)

Predicted enzymes in Streptomyces viridosporus T7A Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme Inferred via pathway Reference
3-carboxy-cis,cis-muconate cycloisomerase beta-ketoadipate (all branches) Davis et al (2009)
3-oxoadipate enol-lactonase beta-ketoadipate (all branches) Davis et al (2009)
4-carboxymuconolactone decarboxylase beta-ketoadipate (all branches) Davis et al (2009)
Protocatechuate 3,4-dioxygenase beta-ketoadipate (all branches) Davis et al (2009)
catechol 1,2-dioxygenase beta-ketoadipate (all branches) Davis et al (2009)
muconate cycloisomerase beta-ketoadipate (all branches) Davis et al (2009)
muconolactone isomerase beta-ketoadipate (all branches) Davis et al (2009)

Culture Collections

Strain Depository ID
T7A ATCC 39115

Genome Sequencing

Strain Status Reference
T7A Yes Davis et al (2013)

Other Databases

Database Comment
NCBI Taxonomy Taxonomy database

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