The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Pseudomonas putida Perestelo isolate 3

Kingdom
Bacteria
Phylum
Proteobacteria
Class
Gamma-proteobacteria
Type
Gram negative
Strain
Perestelo isolate 3
Origin (Details)
Enrichment culture of decomposing plant materials
Origin (Category)
Compost
Genome Sequenced
-
Empirical Data

Utilizible (lignin-derived) carbon sources (10) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
4-hydroxybenzoic acid Perestelo et al (1996) -
benzoic acid Perestelo et al (1996) -
catechol Perestelo et al (1996) -
ferulic acid Perestelo et al (1996) -
kraft lignin Perestelo et al (1996) (Indulin AT)
p-coumaric acid Perestelo et al (1996) -
protocatechuic acid Perestelo et al (1996) -
vanillic acid Perestelo et al (1996) -
vanillin Perestelo et al (1996) -
vanillyl alcohol Perestelo et al (1996) -

Pathways (0) Empirical

No pathways listed for this organism.

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Pseudomonas putida Perestelo isolate 3 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
benzoic acid benzoyl branch benzoic acid Perestelo et al (1996)
beta-ketoadipate (all branches) beta-ketoadipate branch catechol, protocatechuic acid Perestelo et al (1996)
beta-ketoadipate: Catechol branch beta-ketoadipate branch catechol Perestelo et al (1996)
beta-ketoadipate: Protocatechuate branch beta-ketoadipate branch protocatechuic acid Perestelo et al (1996)
catechol meta-cleavage catechol meta-cleavage branch catechol Perestelo et al (1996)
ferulic acid coniferyl branch ferulic acid Perestelo et al (1996)
guaiacol coniferyl branch vanillic acid Perestelo et al (1996)
p-coumaric acid p-coumaric branch 4-hydroxybenzoic acid, p-coumaric acid Perestelo et al (1996)
protocatechuate 2,3-cleavage protocatechuate 2,3-cleavage branch protocatechuic acid Perestelo et al (1996)
protocatechuate 4,5-cleavage beta-ketoadipate branch protocatechuic acid Perestelo et al (1996)
vanillin I coniferyl branch vanillic acid, vanillin Perestelo et al (1996)
vanillin II coniferyl branch vanillic acid, vanillin Perestelo et al (1996)

Predicted enzymes in Pseudomonas putida Perestelo isolate 3 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

No enzymes predicted from confirmed pathways for this organism.

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

No genome sequencing information available for this organism.

Other Databases

Database Comment
NCBI Taxonomy Taxonomy database

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