Pseudomonas putida mt-2

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Pseudomonas putida mt-2

Kingdom: Bacteria
Phylum: Proteobacteria
Class: Gamma-proteobacteria
Type: Gram negative
Strain: mt-2
Origin (Details): Soil
Origin (Category): Soil
Genome Sequenced: -

Empirical Data

Utilizible (lignin-derived) carbon sources (3) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate	Reference(s)	Comment(s)
alkali lignin	Salvachúa et al (2015)	(from corn stover; ~25% lignin conversion, including Klason lignin and monomers)
benzoic acid	Murray et al (1972)	-
dehydropolymerisate (dhp)	Murray et al (1972)	-

Pathways (1) Empirical

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Pathway Name	Reference(s)
catechol meta-cleavage	Murray et al (1972)

Enzymes (2) Empirical

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Enzyme	Gene(s)	Reference(s)
2-hydroxymuconate-6-semialdehyde hydrolase	-	-
catechol 2,3-dioxygenase	-	-

Transporters (0) Empirical

No transporters listed for this organism.

Genes (3) Empirical

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Gene Name	Reference(s)
Ppmt2_xylE	Nakai et al (1983)
Ppmt2_xylG	Inoue et al (1995)
Ppmt2_xylH	-

Predicted Relationships Hide predicted

The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →

Predicted pathways in Pseudomonas putida mt-2 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway	Funneling branch	Inferred via substrate	Reference
benzoic acid	benzoyl branch	benzoic acid	Murray et al (1972)

Predicted enzymes in Pseudomonas putida mt-2 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme	Inferred via pathway	Reference
2-oxopent-4-enoate hydratase	catechol meta-cleavage	Murray et al (1972)
4-hydroxy-2-oxovalerate aldolase	catechol meta-cleavage	Murray et al (1972)

Culture Collections

Strain	Depository ID
mt-2	ATCC 33015

Genome Sequencing

No genome sequencing information available for this organism.

Other Databases

Database	Comment
NCBI Taxonomy	Taxonomy database

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