Rhodococcus rhodochrous 116
- Kingdom
- Bacteria
- Phylum
- Actinobacteria
- Class
- -
- Type
- Gram positive
- Strain
- 116
- Origin (Details)
- Soil
- Origin (Category)
- Soil
- Genome Sequenced
- -
Utilizible (lignin-derived) carbon sources (14) Empirical
NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".
| Substrate | Reference(s) | Comment(s) |
|---|---|---|
| 4-hydroxybenzoic acid | Karlson et al (1993) | - |
| anisole | Karlson et al (1993) | - |
| benzoic acid | Karlson et al (1993) | - |
| corn stover lignin | Karlson et al (1993) | - |
| guaiacol | Karlson et al (1993) | - |
| lignosulfonate | Karlson et al (1993) | - |
| m-cresol | Karlson et al (1993) | - |
| o-cresol | Karlson et al (1993) | - |
| p-anisic acid | Karlson et al (1993) | - |
| phenol | Karlson et al (1993) | - |
| phenylacetic acid | Karlson et al (1993) | - |
| phenyldecane (intermediate) | Karlson et al (1993) | - |
| protocatechuic acid | Karlson et al (1993) | - |
| salicylic acid | Karlson et al (1993) | - |
Pathways (0) Empirical
No pathways listed for this organism.
Enzymes (0) Empirical
No enzymes listed for this organism.
Transporters (0) Empirical
No transporters listed for this organism.
Genes (0) Empirical
No genes listed for this organism.
Predicted pathways in Rhodococcus rhodochrous 116 Predicted
Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?
| Predicted pathway | Funneling branch | Inferred via substrate | Reference |
|---|---|---|---|
| benzoic acid | benzoyl branch | benzoic acid | Karlson et al (1993) |
| beta-ketoadipate (all branches) | beta-ketoadipate branch | protocatechuic acid | Karlson et al (1993) |
| beta-ketoadipate: Protocatechuate branch | beta-ketoadipate branch | protocatechuic acid | Karlson et al (1993) |
| guaiacol | coniferyl branch | guaiacol | Karlson et al (1993) |
| p-coumaric acid | p-coumaric branch | 4-hydroxybenzoic acid | Karlson et al (1993) |
| phenol | phenol branch | phenol | Karlson et al (1993) |
| protocatechuate 2,3-cleavage | protocatechuate 2,3-cleavage branch | protocatechuic acid | Karlson et al (1993) |
| protocatechuate 4,5-cleavage | beta-ketoadipate branch | protocatechuic acid | Karlson et al (1993) |
| salicylic acid I | benzoyl branch | salicylic acid | Karlson et al (1993) |
| salicylic acid II | gentisate branch | salicylic acid | Karlson et al (1993) |
Predicted enzymes in Rhodococcus rhodochrous 116 Predicted
Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?
No enzymes predicted from confirmed pathways for this organism.
Culture Collections
No culture collection information available for this organism.
Genome Sequencing
No genome sequencing information available for this organism.
Other Databases
| Database | Comment |
|---|---|
| NCBI Taxonomy | Taxonomy database |