The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Pseudomonas fluorescens AN103

Kingdom
Bacteria
Phylum
Proteobacteria
Class
Gamma-proteobacteria
Type
Gram negative
Strain
AN103
Origin (Details)
Soil
Origin (Category)
Soil
Genome Sequenced
Yes; Strain Pf-5
Synonyms
Liquidomonas fluorescens
Bacillus fluorescens
Empirical Data

Utilizible (lignin-derived) carbon sources (7) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
4-hydroxybenzoic acid Paulsen et al (2005) -
benzoic acid Paulsen et al (2005) -
catechol Paulsen et al (2005) -
ferulic acid Narbad et al (1998) -
protocatechuic acid Paulsen et al (2005) -
vanillic acid Paulsen et al (2005) -
vanillin Narbad et al (1998) -

Pathways (1) Empirical

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Pathway Name Reference(s)
beta-ketoadipate (all branches) Narbad et al (1998)

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Pseudomonas fluorescens AN103 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
benzoic acid benzoyl branch benzoic acid Paulsen et al (2005)
beta-ketoadipate: Catechol branch beta-ketoadipate branch catechol Paulsen et al (2005)
beta-ketoadipate: Protocatechuate branch beta-ketoadipate branch protocatechuic acid Paulsen et al (2005)
catechol meta-cleavage catechol meta-cleavage branch catechol Paulsen et al (2005)
ferulic acid coniferyl branch ferulic acid Narbad et al (1998)
guaiacol coniferyl branch vanillic acid Paulsen et al (2005)
p-coumaric acid p-coumaric branch 4-hydroxybenzoic acid Paulsen et al (2005)
protocatechuate 2,3-cleavage protocatechuate 2,3-cleavage branch protocatechuic acid Paulsen et al (2005)
protocatechuate 4,5-cleavage beta-ketoadipate branch protocatechuic acid Paulsen et al (2005)
vanillin I coniferyl branch vanillic acid, vanillin Paulsen et al (2005), Narbad et al (1998)
vanillin II coniferyl branch vanillic acid, vanillin Paulsen et al (2005), Narbad et al (1998)

Predicted enzymes in Pseudomonas fluorescens AN103 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme Inferred via pathway Reference
3-carboxy-cis,cis-muconate cycloisomerase beta-ketoadipate (all branches) Narbad et al (1998)
3-oxoadipate enol-lactonase beta-ketoadipate (all branches) Narbad et al (1998)
4-carboxymuconolactone decarboxylase beta-ketoadipate (all branches) Narbad et al (1998)
Protocatechuate 3,4-dioxygenase beta-ketoadipate (all branches) Narbad et al (1998)
catechol 1,2-dioxygenase beta-ketoadipate (all branches) Narbad et al (1998)
muconate cycloisomerase beta-ketoadipate (all branches) Narbad et al (1998)
muconolactone isomerase beta-ketoadipate (all branches) Narbad et al (1998)

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

Strain Status Reference
AN103 Yes; Strain Pf-5 Paulsen et al (2005)

Other Databases

Database Comment
NCBI Taxonomy Taxonomy database

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