Desulfobacterium catecholicum NZva20
- Kingdom
- Bacteria
- Phylum
- Proteobacteria
- Class
- Delta-proteobacteria
- Type
- Gram negative
- Strain
- NZva20
- Origin (Details)
- Anoxic mud from the Delaware Bay north-east of Nelson, New Zealand
- Origin (Category)
- Sediment
- Genome Sequenced
- -
Utilizible (lignin-derived) carbon sources (7) Empirical
NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".
| Substrate | Reference(s) | Comment(s) |
|---|---|---|
| 4-hydroxybenzoic acid | Szewzyk et al (1987) | (anaerobically) |
| benzoic acid | Szewzyk et al (1987) | (anaerobically) |
| catechol | Szewzyk et al (1987) | (anaerobically) |
| guaiacol | Szewzyk et al (1987) | (anaerobically) |
| hydroquinone | Szewzyk et al (1987) | (anaerobically) |
| protocatechuic acid | Szewzyk et al (1987) | (anaerobically) |
| resorcinol | Szewzyk et al (1987) | (anaerobically) |
Pathways (0) Empirical
No pathways listed for this organism.
Enzymes (0) Empirical
No enzymes listed for this organism.
Transporters (0) Empirical
No transporters listed for this organism.
Genes (0) Empirical
No genes listed for this organism.
Predicted pathways in Desulfobacterium catecholicum NZva20 Predicted
Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?
| Predicted pathway | Funneling branch | Inferred via substrate | Reference |
|---|---|---|---|
| benzoic acid | benzoyl branch | benzoic acid | Szewzyk et al (1987) |
| beta-ketoadipate (all branches) | beta-ketoadipate branch | catechol, protocatechuic acid | Szewzyk et al (1987) |
| beta-ketoadipate: Catechol branch | beta-ketoadipate branch | catechol | Szewzyk et al (1987) |
| beta-ketoadipate: Protocatechuate branch | beta-ketoadipate branch | protocatechuic acid | Szewzyk et al (1987) |
| catechol meta-cleavage | catechol meta-cleavage branch | catechol | Szewzyk et al (1987) |
| guaiacol | coniferyl branch | guaiacol | Szewzyk et al (1987) |
| p-coumaric acid | p-coumaric branch | 4-hydroxybenzoic acid | Szewzyk et al (1987) |
| protocatechuate 2,3-cleavage | protocatechuate 2,3-cleavage branch | protocatechuic acid | Szewzyk et al (1987) |
| protocatechuate 4,5-cleavage | beta-ketoadipate branch | protocatechuic acid | Szewzyk et al (1987) |
| resorcinol | resorcinol branch | resorcinol | Szewzyk et al (1987) |
Predicted enzymes in Desulfobacterium catecholicum NZva20 Predicted
Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?
No enzymes predicted from confirmed pathways for this organism.
Culture Collections
No culture collection information available for this organism.
Genome Sequencing
No genome sequencing information available for this organism.
Other Databases
| Database | Comment |
|---|---|
| NCBI Taxonomy | Taxonomy database |