The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

brinkdp/eLignin 0 0

Pseudomonas putida PRS2000

Kingdom
Bacteria
Phylum
Proteobacteria
Class
Gamma-proteobacteria
Type
Gram negative
Strain
PRS2000
Origin (Details)
Derived from <i>P. putida</i> Strain 90
Origin (Category)
Lab-made derivative
Genome Sequenced
-
Empirical Data

Utilizible (lignin-derived) carbon sources (2) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
4-hydroxybenzoic acid Ornston et al (1976) -
pinoresinol Ornston et al (1976) -

Pathways (4) Empirical

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Pathway Name Reference(s)
beta-ketoadipate (all branches) Ornston et al (1976)
beta-ketoadipate: Catechol branch Ornston et al (1976)
beta-ketoadipate: lower branch Ornston et al (1976)
beta-ketoadipate: Protocatechuate branch Ornston et al (1976)

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (1) Empirical

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Transporter Reference
Pp_pcaKp Nichols et al (1997)

Genes (1) Empirical

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Gene Name Reference(s)
Pp_PcaK Nichols et al (1997)
Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Pseudomonas putida PRS2000 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
p-coumaric acid p-coumaric branch 4-hydroxybenzoic acid Ornston et al (1976)

Predicted enzymes in Pseudomonas putida PRS2000 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme Inferred via pathway Reference
3-carboxy-cis,cis-muconate cycloisomerase beta-ketoadipate: Protocatechuate branch Ornston et al (1976)
3-oxoadipate enol-lactonase beta-ketoadipate: Protocatechuate branch Ornston et al (1976)
4-carboxymuconolactone decarboxylase beta-ketoadipate: Protocatechuate branch Ornston et al (1976)
Protocatechuate 3,4-dioxygenase beta-ketoadipate: Protocatechuate branch Ornston et al (1976)
catechol 1,2-dioxygenase beta-ketoadipate: Catechol branch Ornston et al (1976)
muconate cycloisomerase beta-ketoadipate: Catechol branch Ornston et al (1976)
muconolactone isomerase beta-ketoadipate: Catechol branch Ornston et al (1976)

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

No genome sequencing information available for this organism.

Other Databases

No external database links are available for this organism.

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