The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Streptomyces coelicolor A3(2) M600

Kingdom
Bacteria
Phylum
Actinobacteria
Class
-
Type
Gram positive
Strain
A3(2) M600
Origin (Details)
Soil
Origin (Category)
Soil
Genome Sequenced
Yes
Empirical Data

Utilizible (lignin-derived) carbon sources (2) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
4-hydroxybenzoic acid Davis et al (2009) -
protocatechuic acid Davis et al (2009) -

Pathways (1) Empirical

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Pathway Name Reference(s)
beta-ketoadipate (all branches) Davis et al (2009)

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Streptomyces coelicolor A3(2) M600 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
beta-ketoadipate: Protocatechuate branch beta-ketoadipate branch protocatechuic acid Davis et al (2009)
p-coumaric acid p-coumaric branch 4-hydroxybenzoic acid Davis et al (2009)
protocatechuate 2,3-cleavage protocatechuate 2,3-cleavage branch protocatechuic acid Davis et al (2009)
protocatechuate 4,5-cleavage beta-ketoadipate branch protocatechuic acid Davis et al (2009)

Predicted enzymes in Streptomyces coelicolor A3(2) M600 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme Inferred via pathway Reference
3-carboxy-cis,cis-muconate cycloisomerase beta-ketoadipate (all branches) Davis et al (2009)
3-oxoadipate enol-lactonase beta-ketoadipate (all branches) Davis et al (2009)
4-carboxymuconolactone decarboxylase beta-ketoadipate (all branches) Davis et al (2009)
Protocatechuate 3,4-dioxygenase beta-ketoadipate (all branches) Davis et al (2009)
catechol 1,2-dioxygenase beta-ketoadipate (all branches) Davis et al (2009)
muconate cycloisomerase beta-ketoadipate (all branches) Davis et al (2009)
muconolactone isomerase beta-ketoadipate (all branches) Davis et al (2009)

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

Strain Status Reference
A3(2) M600 Yes Bentley et al (2002)

Other Databases

Database Comment
NCBI Taxonomy Taxonomy database

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