Klebsiella pneumoniae M5a1
- Kingdom
- Bacteria
- Phylum
- Proteobacteria
- Class
- Gamma-proteobacteria
- Type
- Gram negative
- Strain
- M5a1
- Origin (Details)
- Soil
- Origin (Category)
- Soil
- Genome Sequenced
- Yes
- Synonyms
- Klebsiella pneumoniae aerogenes
Empirical Data
Utilizible (lignin-derived) carbon sources (5) Empirical
NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".
| Substrate | Reference(s) | Comment(s) |
|---|---|---|
| 3-hydroxybenzoic acid | Jones et al (1990) | - |
| 4-hydroxybenzoic acid | Jones et al (1990) | - |
| benzoic acid | Jones et al (1990) | - |
| kraft lignin | Deschamps et al (1980) | - |
| protocatechuic acid | Jones et al (1990) | - |
Pathways (1) Empirical
| Pathway Name | Reference(s) |
|---|---|
| gentisate-cleavage | Jones et al (1990) |
Enzymes (0) Empirical
No enzymes listed for this organism.
Predicted Relationships
Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
Predicted pathways in Klebsiella pneumoniae M5a1 Predicted
Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?
| Predicted pathway | Funneling branch | Inferred via substrate | Reference |
|---|---|---|---|
| benzoic acid | benzoyl branch | benzoic acid | Jones et al (1990) |
| beta-ketoadipate (all branches) | beta-ketoadipate branch | protocatechuic acid | Jones et al (1990) |
| beta-ketoadipate: Protocatechuate branch | beta-ketoadipate branch | protocatechuic acid | Jones et al (1990) |
| m-cresol | gentisate branch | 3-hydroxybenzoic acid | Jones et al (1990) |
| p-coumaric acid | p-coumaric branch | 4-hydroxybenzoic acid | Jones et al (1990) |
| protocatechuate 2,3-cleavage | protocatechuate 2,3-cleavage branch | protocatechuic acid | Jones et al (1990) |
| protocatechuate 4,5-cleavage | beta-ketoadipate branch | protocatechuic acid | Jones et al (1990) |
Predicted enzymes in Klebsiella pneumoniae M5a1 Predicted
Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?
| Predicted enzyme | Inferred via pathway | Reference |
|---|---|---|
| fumarylpyruvate hydrolase | gentisate-cleavage | Jones et al (1990) |
| gentisate 1,2-dioxygenase | gentisate-cleavage | Jones et al (1990) |
| maleylpyruvate isomerase (mycothiol-dependent) | gentisate-cleavage | Jones et al (1990) |
Culture Collections
| Strain | Depository ID |
|---|---|
| M5a1 | DSM 3539 |
| M5a1 | NCIMB 12204 |
Genome Sequencing
| Strain | Status | Reference |
|---|---|---|
| M5a1 | Yes | Pang et al (2016) |
Other Databases
| Database | Comment |
|---|---|
| NCBI Taxonomy | Taxonomy database |