Rhodococcus opacus PD630 (DSMZ 44193)

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Rhodococcus opacus PD630 (DSMZ 44193)

Kingdom: Bacteria
Phylum: Actinobacteria
Class: -
Type: Gram positive
Strain: PD630 (DSMZ 44193)
Origin (Details): Soil sample from a gas works plant
Origin (Category): Soil
Genome Sequenced: -

Empirical Data

Utilizible (lignin-derived) carbon sources (7) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate	Reference(s)	Comment(s)
4-hydroxybenzoic acid	Henson et al (2018)	-
anisoin	Alvarez et al (1996)	-
benzoic acid	Henson et al (2018)	(sodium benzoate)
guaiacol	Henson et al (2018)	-
phenol	Henson et al (2018)	-
phenylacetic acid	Alvarez et al (1996)	-
vanillic acid	Henson et al (2018)	-

Pathways (8) Empirical

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Pathway Name	Reference(s)
benzoic acid	Henson et al (2018)
beta-ketoadipate (all branches)	Henson et al (2018)
beta-ketoadipate: Catechol branch	Henson et al (2018)
beta-ketoadipate: Protocatechuate branch	Henson et al (2018)
guaiacol	Henson et al (2018)
p-coumaric acid	Henson et al (2018)
phenol	Henson et al (2018)
vanillin II	Henson et al (2018)

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted

The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →

Predicted pathways in Rhodococcus opacus PD630 (DSMZ 44193) Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway	Funneling branch	Inferred via substrate	Reference
vanillin I	coniferyl branch	vanillic acid	Henson et al (2018)

Predicted enzymes in Rhodococcus opacus PD630 (DSMZ 44193) Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme	Inferred via pathway	Reference
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase	benzoic acid	Henson et al (2018)
3-carboxy-cis,cis-muconate cycloisomerase	beta-ketoadipate: Protocatechuate branch	Henson et al (2018)
3-oxoadipate enol-lactonase	beta-ketoadipate: Protocatechuate branch	Henson et al (2018)
4-carboxymuconolactone decarboxylase	beta-ketoadipate: Protocatechuate branch	Henson et al (2018)
4-hydroxybenzaldehyde dehydrogenase	p-coumaric acid	Henson et al (2018)
4-hydroxybenzoate 3-monooxygenase	p-coumaric acid	Henson et al (2018)
Benzoate 1,2-dioxygenase	benzoic acid	Henson et al (2018)
P450 aryl-O-demethylase	guaiacol	Henson et al (2018)
Protocatechuate 3,4-dioxygenase	beta-ketoadipate: Protocatechuate branch	Henson et al (2018)
Vanillate monooxygenase	vanillin II	Henson et al (2018)
Vanillin dehydrogenase	vanillin II	Henson et al (2018)
caffeate coenzyme A ligase	p-coumaric acid	Henson et al (2018)
catechol 1,2-dioxygenase	beta-ketoadipate: Catechol branch	Henson et al (2018)
enoyl-CoA hydratase/lyase	p-coumaric acid	Henson et al (2018)
muconate cycloisomerase	beta-ketoadipate: Catechol branch	Henson et al (2018)
muconolactone isomerase	beta-ketoadipate: Catechol branch	Henson et al (2018)
non-oxidative vanillate decarboxylase	guaiacol	Henson et al (2018)
vanillin synthase	phenol	Henson et al (2018)

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

No genome sequencing information available for this organism.

Other Databases

No external database links are available for this organism.

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