Desulfobacterium phenolicum Ph01
- Kingdom
- Bacteria
- Phylum
- Proteobacteria
- Class
- Delta-proteobacteria
- Type
- Gram negative
- Strain
- Ph01
- Origin (Details)
- Black,organic-rich mud from the North Sea coast near Norddeich, Northern Germany
- Origin (Category)
- Sediment
- Genome Sequenced
- -
Utilizible (lignin-derived) carbon sources (9) Empirical
NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".
| Substrate | Reference(s) | Comment(s) |
|---|---|---|
| 4-cresol | Bak et al (1986) | (anaerobically) |
| 4-hydroxybenzaldehyde | Bak et al (1986) | (anaerobically) |
| 4-hydroxybenzoic acid | Bak et al (1986) | (anaerobically) |
| benzoic acid | Bak et al (1986) | (anaerobically) |
| ferulic acid | Bak et al (1986) | (anaerobically) |
| phenol | Bak et al (1986) | (anaerobically) |
| phenylacetic acid | Bak et al (1986) | (anaerobically) |
| phenylalanine | Bak et al (1986) | (anaerobically) |
| salicylic acid | Bak et al (1986) | (anaerobically); Reported as: 2-hydroxybenzoic acid |
Pathways (0) Empirical
No pathways listed for this organism.
Enzymes (0) Empirical
No enzymes listed for this organism.
Transporters (0) Empirical
No transporters listed for this organism.
Genes (0) Empirical
No genes listed for this organism.
Predicted pathways in Desulfobacterium phenolicum Ph01 Predicted
Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?
| Predicted pathway | Funneling branch | Inferred via substrate | Reference |
|---|---|---|---|
| benzoic acid | benzoyl branch | benzoic acid | Bak et al (1986) |
| ferulic acid | coniferyl branch | ferulic acid | Bak et al (1986) |
| p-coumaric acid | p-coumaric branch | 4-hydroxybenzaldehyde, 4-hydroxybenzoic acid | Bak et al (1986) |
| p-cresol | p-coumaric branch | 4-cresol | Bak et al (1986) |
| phenol | phenol branch | phenol | Bak et al (1986) |
| salicylic acid I | benzoyl branch | salicylic acid | Bak et al (1986) |
| salicylic acid II | gentisate branch | salicylic acid | Bak et al (1986) |
Predicted enzymes in Desulfobacterium phenolicum Ph01 Predicted
Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?
No enzymes predicted from confirmed pathways for this organism.
Culture Collections
No culture collection information available for this organism.
Genome Sequencing
No genome sequencing information available for this organism.
Other Databases
| Database | Comment |
|---|---|
| NCBI Taxonomy | Taxonomy database |