Rhodococcus jostii RHA1

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Rhodococcus jostii RHA1

Kingdom: Bacteria
Phylum: Actinobacteria
Class: -
Type: Gram positive
Strain: RHA1
Origin (Details): Soil
Origin (Category): Soil
Genome Sequenced: Yes

Empirical Data

Utilizible (lignin-derived) carbon sources (11) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate	Reference(s)	Comment(s)
4-cresol	Otani et al (2014)	-
4-hydroxybenzoic acid	Salvachúa et al (2015)	-
alkali lignin	Salvachúa et al (2015)	(from corn stover; ~25% lignin conversion, including Klason lignin and monomers)
catechol	Kasai et al (2015)	(Gamma-resorcylate)
ferulic acid	Sainsbury et al (2013)	-
kraft lignin	Sainsbury et al (2013)	-
p-coumaric acid	Salvachúa et al (2015)	-
phenol	Otani et al (2014)	-
resorcinol	Kasai et al (2015)	-
vanillic acid	Salvachúa et al (2015)	-
vanillin	Chen et al (2012)	-

Pathways (2) Empirical

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Pathway Name	Reference(s)
beta-ketoadipate (all branches)	McLeod et al (2006)
resorcinol	Kasai et al (2015)

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted

The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →

Predicted pathways in Rhodococcus jostii RHA1 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway	Funneling branch	Inferred via substrate	Reference
beta-ketoadipate: Catechol branch	beta-ketoadipate branch	catechol	Kasai et al (2015)
catechol meta-cleavage	catechol meta-cleavage branch	catechol	Kasai et al (2015)
ferulic acid	coniferyl branch	ferulic acid	Sainsbury et al (2013)
guaiacol	coniferyl branch	vanillic acid	Salvachúa et al (2015)
p-coumaric acid	p-coumaric branch	4-hydroxybenzoic acid, p-coumaric acid	Salvachúa et al (2015)
p-cresol	p-coumaric branch	4-cresol	Otani et al (2014)
phenol	phenol branch	phenol	Otani et al (2014)
vanillin I	coniferyl branch	vanillic acid, vanillin	Salvachúa et al (2015), Chen et al (2012)
vanillin II	coniferyl branch	vanillic acid, vanillin	Salvachúa et al (2015), Chen et al (2012)

Predicted enzymes in Rhodococcus jostii RHA1 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme	Inferred via pathway	Reference
3-carboxy-cis,cis-muconate cycloisomerase	beta-ketoadipate (all branches)	McLeod et al (2006)
3-oxoadipate enol-lactonase	beta-ketoadipate (all branches)	McLeod et al (2006)
4-carboxymuconolactone decarboxylase	beta-ketoadipate (all branches)	McLeod et al (2006)
Protocatechuate 3,4-dioxygenase	beta-ketoadipate (all branches)	McLeod et al (2006)
catechol 1,2-dioxygenase	beta-ketoadipate (all branches)	McLeod et al (2006)
hydroxyquinol 1,2-dioxygenase I	resorcinol	Kasai et al (2015)
hydroxyquinol 1,2-dioxygenase II	resorcinol	Kasai et al (2015)
maleylacetate reductase I	resorcinol	Kasai et al (2015)
maleylacetate reductase II	resorcinol	Kasai et al (2015)
muconate cycloisomerase	beta-ketoadipate (all branches)	McLeod et al (2006)
muconolactone isomerase	beta-ketoadipate (all branches)	McLeod et al (2006)
resorcinol 4-hydroxylase	resorcinol	Kasai et al (2015)

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

Strain	Status	Reference
RHA1	Yes	McLeod et al (2006)

Other Databases

Database	Comment
NCBI Taxonomy	Taxonomy database

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