The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Comamonas testosteroni CNB-1

Kingdom
Bacteria
Phylum
Proteobacteria
Class
Beta-proteobacteria
Type
Gram negative
Strain
CNB-1
Origin (Details)
Activated sludge
Origin (Category)
Wastewater sludge
Genome Sequenced
-
Empirical Data

Utilizible (lignin-derived) carbon sources (5) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
3-hydroxybenzoic acid Ni et al (2012) -
4-hydroxybenzoic acid Ni et al (2012) -
gentisic acid Ni et al (2012) -
phenol Ni et al (2012) -
vanillic acid Ni et al (2012) -

Pathways (1) Empirical

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Pathway Name Reference(s)
protocatechuate 4,5-cleavage Ni et al (2012)

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Comamonas testosteroni CNB-1 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
gentisate-cleavage gentisate branch gentisic acid Ni et al (2012)
guaiacol coniferyl branch vanillic acid Ni et al (2012)
m-cresol gentisate branch 3-hydroxybenzoic acid Ni et al (2012)
p-coumaric acid p-coumaric branch 4-hydroxybenzoic acid Ni et al (2012)
phenol phenol branch phenol Ni et al (2012)
vanillin I coniferyl branch vanillic acid Ni et al (2012)
vanillin II coniferyl branch vanillic acid Ni et al (2012)

Predicted enzymes in Comamonas testosteroni CNB-1 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme Inferred via pathway Reference
2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase protocatechuate 4,5-cleavage Ni et al (2012)
2-pyrone-4,6-dicarboxylate hydrolase protocatechuate 4,5-cleavage Ni et al (2012)
2-pyrone-4,6-dicarboxylate lactonase protocatechuate 4,5-cleavage Ni et al (2012)
4-oxalmesaconate hydratase protocatechuate 4,5-cleavage Ni et al (2012)
4-oxalomesaconate tautomerase protocatechuate 4,5-cleavage Ni et al (2012)
HMG aldolase protocatechuate 4,5-cleavage Ni et al (2012)
oxaloacetate decarboxylase protocatechuate 4,5-cleavage Ni et al (2012)
protocatechuate 4,5-dioxygenase protocatechuate 4,5-cleavage Ni et al (2012)

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

No genome sequencing information available for this organism.

Other Databases

Database Comment
NCBI Taxonomy Taxonomy database

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