The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Phanerochaete chrysosporium ATCC 34541

Kingdom
Fungi
Phylum
Basidiomycota
Class
-
Type
White-rot fungus
Strain
ATCC 34541
Origin (Details)
Rotten beech wood chip, Fagus grandifolia, in storage 4 months, Waterville, ME (According to ATCC)
Origin (Category)
Forest and wood samples
Genome Sequenced
Yes; Strain RP78
Empirical Data

Utilizible (lignin-derived) carbon sources (13) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
4-chlorophenol Nakamura et al (2011) -
4-nitrophenol Teramoto et al (2004) -
biphenyl Hiratsuka et al (2005) -
biphenylene Hiratsuka et al (2005) -
cornstalk Zhao et al (2012) -
cotton stalks SHI et al (2008) -
dibenzo-p-dioxin Hiratsuka et al (2005) -
dibenzofuran Hiratsuka et al (2005) -
diphenyl ether Hiratsuka et al (2005) -
hydroquinone Nakamura et al (2011) -
olive pomace Haddadin et al (2009) -
phenol Nakamura et al (2011) -
vanillin Nakamura et al (2011) -

Pathways (0) Empirical

No pathways listed for this organism.

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Phanerochaete chrysosporium ATCC 34541 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
phenol phenol branch phenol Nakamura et al (2011)
vanillin I coniferyl branch vanillin Nakamura et al (2011)
vanillin II coniferyl branch vanillin Nakamura et al (2011)

Predicted enzymes in Phanerochaete chrysosporium ATCC 34541 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

No enzymes predicted from confirmed pathways for this organism.

Culture Collections

Strain Depository ID
ATCC 34541 ATCC 34541
ATCC 34541 NBRC 31249 (IFO 31249)

Genome Sequencing

Strain Status Reference
ATCC 34541 Yes; Strain RP78 Martinez et al (2004)

Other Databases

Database Comment
NCBI Taxonomy Taxonomy database

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