The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Serratia marcescens C5

Kingdom
Bacteria
Phylum
Proteobacteria
Class
Gamma-proteobacteria
Type
Gram negative
Strain
C5
Origin (Details)
Lignin-containing environments
Origin (Category)
Forest and wood samples
Genome Sequenced
-
Empirical Data

Utilizible (lignin-derived) carbon sources (7) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
4-hydroxybenzoic acid Rhoads et al (1995) -
anisoin Rhoads et al (1995) -
benzylvanillin Rhoads et al (1995) -
cinnamic acid Rhoads et al (1995) -
coniferyl alcohol Rhoads et al (1995) -
vanillic acid Rhoads et al (1995) -
veratrylglycerol-beta-guaiacyl ether Rhoads et al (1995) -

Pathways (0) Empirical

No pathways listed for this organism.

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Serratia marcescens C5 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
coniferyl alcohol coniferyl branch coniferyl alcohol Rhoads et al (1995)
guaiacol coniferyl branch vanillic acid Rhoads et al (1995)
p-coumaric acid p-coumaric branch 4-hydroxybenzoic acid Rhoads et al (1995)
vanillin I coniferyl branch vanillic acid Rhoads et al (1995)
vanillin II coniferyl branch vanillic acid Rhoads et al (1995)

Predicted enzymes in Serratia marcescens C5 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

No enzymes predicted from confirmed pathways for this organism.

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

No genome sequencing information available for this organism.

Other Databases

Database Comment
NCBI Taxonomy Taxonomy database

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