Thauera sp. Cin3,4

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Thauera sp. Cin3,4

Kingdom: Bacteria
Phylum: Proteobacteria
Class: Beta-proteobacteria
Type: Gram negative
Strain: Cin3,4
Origin (Details): Wastewater treatment plant at Mahres, Tunisia
Origin (Category): Wastewater sludge
Genome Sequenced: -

Empirical Data

Utilizible (lignin-derived) carbon sources (12) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate	Reference(s)	Comment(s)
3-hydroxybenzoic acid	Mechichi et al (2005)	(anaerobically)
4-cresol	Mechichi et al (2005)	-
4-hydroxybenzoic acid	Mechichi et al (2005)	-
4-hydroxyphenylacetic acid	Mechichi et al (2005)	(anaerobically)
benzoic acid	Mechichi et al (2005)	-
caffeic acid	Mechichi et al (2005)	(anaerobically)
catechol	Mechichi et al (2005)	-
cinnamic acid	Mechichi et al (2005)	-
p-coumaric acid	Mechichi et al (2005)	(anaerobically)
phenol	Mechichi et al (2005)	-
phenylacetic acid	Mechichi et al (2005)	(anaerobically)
protocatechuic acid	Mechichi et al (2005)	(anaerobically); Reported as: 3,4-dihydroxybenzoic acid

Pathways (0) Empirical

No pathways listed for this organism.

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted

The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →

Predicted pathways in Thauera sp. Cin3,4 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway	Funneling branch	Inferred via substrate	Reference
benzoic acid	benzoyl branch	benzoic acid	Mechichi et al (2005)
beta-ketoadipate (all branches)	beta-ketoadipate branch	catechol, protocatechuic acid	Mechichi et al (2005)
beta-ketoadipate: Catechol branch	beta-ketoadipate branch	catechol	Mechichi et al (2005)
beta-ketoadipate: Protocatechuate branch	beta-ketoadipate branch	protocatechuic acid	Mechichi et al (2005)
caffeic acid	caffeic acid branch	caffeic acid	Mechichi et al (2005)
catechol meta-cleavage	catechol meta-cleavage branch	catechol	Mechichi et al (2005)
m-cresol	gentisate branch	3-hydroxybenzoic acid	Mechichi et al (2005)
p-coumaric acid	p-coumaric branch	4-hydroxybenzoic acid, p-coumaric acid	Mechichi et al (2005)
p-cresol	p-coumaric branch	4-cresol	Mechichi et al (2005)
phenol	phenol branch	phenol	Mechichi et al (2005)
protocatechuate 2,3-cleavage	protocatechuate 2,3-cleavage branch	protocatechuic acid	Mechichi et al (2005)
protocatechuate 4,5-cleavage	beta-ketoadipate branch	protocatechuic acid	Mechichi et al (2005)

Predicted enzymes in Thauera sp. Cin3,4 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

No enzymes predicted from confirmed pathways for this organism.

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

No genome sequencing information available for this organism.

Other Databases

Database	Comment
NCBI Taxonomy	Taxonomy database

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