The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Rhodotorula graminis WP1

Kingdom
Fungi
Phylum
Basidiomycota
Class
-
Type
Yeast
Strain
WP1
Origin (Details)
Soil
Origin (Category)
Soil
Genome Sequenced
Yes
Empirical Data

Utilizible (lignin-derived) carbon sources (7) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
3-hydroxybenzoic acid Durham et al (1984) -
benzoic acid Durham et al (1984) -
catechol Durham et al (1984) -
mandelic acid Durham et al (1984) -
phenylalanine Durham et al (1984) -
protocatechuic acid Durham et al (1984) -
salicylic acid Durham et al (1984) -

Pathways (1) Empirical

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Pathway Name Reference(s)
beta-ketoadipate (all branches) Durham et al (1984)

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Rhodotorula graminis WP1 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
benzoic acid benzoyl branch benzoic acid Durham et al (1984)
beta-ketoadipate: Catechol branch beta-ketoadipate branch catechol Durham et al (1984)
beta-ketoadipate: Protocatechuate branch beta-ketoadipate branch protocatechuic acid Durham et al (1984)
catechol meta-cleavage catechol meta-cleavage branch catechol Durham et al (1984)
m-cresol gentisate branch 3-hydroxybenzoic acid Durham et al (1984)
protocatechuate 2,3-cleavage protocatechuate 2,3-cleavage branch protocatechuic acid Durham et al (1984)
protocatechuate 4,5-cleavage beta-ketoadipate branch protocatechuic acid Durham et al (1984)
salicylic acid I benzoyl branch salicylic acid Durham et al (1984)
salicylic acid II gentisate branch salicylic acid Durham et al (1984)

Predicted enzymes in Rhodotorula graminis WP1 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme Inferred via pathway Reference
3-carboxy-cis,cis-muconate cycloisomerase beta-ketoadipate (all branches) Durham et al (1984)
3-oxoadipate enol-lactonase beta-ketoadipate (all branches) Durham et al (1984)
4-carboxymuconolactone decarboxylase beta-ketoadipate (all branches) Durham et al (1984)
Protocatechuate 3,4-dioxygenase beta-ketoadipate (all branches) Durham et al (1984)
catechol 1,2-dioxygenase beta-ketoadipate (all branches) Durham et al (1984)
muconate cycloisomerase beta-ketoadipate (all branches) Durham et al (1984)
muconolactone isomerase beta-ketoadipate (all branches) Durham et al (1984)

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

Strain Status Reference
WP1 Yes Firrincieli et al (2015)

Other Databases

Database Comment
NCBI Taxonomy Taxonomy database

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