Pseudomonas sp. HR199
- Kingdom
- Bacteria
- Phylum
- Proteobacteria
- Class
- Gamma-proteobacteria
- Type
- Gram negative
- Strain
- HR199
- Origin (Details)
- Soil
- Origin (Category)
- Soil
- Genome Sequenced
- -
Utilizible (lignin-derived) carbon sources (7) Empirical
NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".
| Substrate | Reference(s) | Comment(s) |
|---|---|---|
| coniferyl alcohol | Overhage et al (1999) | - |
| coniferyl aldehyde | Overhage et al (1999) | - |
| eugenol | Overhage et al (1999) | - |
| ferulic acid | Overhage et al (1999) | - |
| protocatechuic acid | Overhage et al (1999) | - |
| vanillic acid | Overhage et al (1999) | - |
| vanillin | Overhage et al (1999) | - |
Pathways (0) Empirical
No pathways listed for this organism.
Enzymes (0) Empirical
No enzymes listed for this organism.
Transporters (0) Empirical
No transporters listed for this organism.
Genes (0) Empirical
No genes listed for this organism.
Predicted pathways in Pseudomonas sp. HR199 Predicted
Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?
| Predicted pathway | Funneling branch | Inferred via substrate | Reference |
|---|---|---|---|
| beta-ketoadipate (all branches) | beta-ketoadipate branch | protocatechuic acid | Overhage et al (1999) |
| beta-ketoadipate: Protocatechuate branch | beta-ketoadipate branch | protocatechuic acid | Overhage et al (1999) |
| coniferyl alcohol | coniferyl branch | coniferyl alcohol, coniferyl aldehyde | Overhage et al (1999) |
| ferulic acid | coniferyl branch | ferulic acid | Overhage et al (1999) |
| guaiacol | coniferyl branch | vanillic acid | Overhage et al (1999) |
| protocatechuate 2,3-cleavage | protocatechuate 2,3-cleavage branch | protocatechuic acid | Overhage et al (1999) |
| protocatechuate 4,5-cleavage | beta-ketoadipate branch | protocatechuic acid | Overhage et al (1999) |
| vanillin I | coniferyl branch | vanillic acid, vanillin | Overhage et al (1999) |
| vanillin II | coniferyl branch | vanillic acid, vanillin | Overhage et al (1999) |
Predicted enzymes in Pseudomonas sp. HR199 Predicted
Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?
No enzymes predicted from confirmed pathways for this organism.
Culture Collections
No culture collection information available for this organism.
Genome Sequencing
No genome sequencing information available for this organism.
Other Databases
No external database links are available for this organism.