The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Rhodotorula creatinivora PB7

Kingdom
Fungi
Phylum
Basidiomycota
Class
-
Type
Yeast
Strain
PB7
Origin (Details)
Soil (Oil-shale mine)
Origin (Category)
Caves and mines
Genome Sequenced
-
Synonyms
Leucosporidium creatinivorum
Empirical Data

Utilizible (lignin-derived) carbon sources (7) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
4-cresol Bergauer et al (2005) -
benzoic acid Bergauer et al (2005) -
catechol Bergauer et al (2005) -
hydroquinone Bergauer et al (2005) -
phenol Bergauer et al (2005) -
resorcinol Bergauer et al (2005) -
salicylic acid Bergauer et al (2005) -

Pathways (0) Empirical

No pathways listed for this organism.

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Rhodotorula creatinivora PB7 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
benzoic acid benzoyl branch benzoic acid Bergauer et al (2005)
beta-ketoadipate (all branches) beta-ketoadipate branch catechol Bergauer et al (2005)
beta-ketoadipate: Catechol branch beta-ketoadipate branch catechol Bergauer et al (2005)
catechol meta-cleavage catechol meta-cleavage branch catechol Bergauer et al (2005)
p-cresol p-coumaric branch 4-cresol Bergauer et al (2005)
phenol phenol branch phenol Bergauer et al (2005)
resorcinol resorcinol branch resorcinol Bergauer et al (2005)
salicylic acid I benzoyl branch salicylic acid Bergauer et al (2005)
salicylic acid II gentisate branch salicylic acid Bergauer et al (2005)

Predicted enzymes in Rhodotorula creatinivora PB7 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

No enzymes predicted from confirmed pathways for this organism.

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

No genome sequencing information available for this organism.

Other Databases

Database Comment
NCBI Taxonomy Taxonomy database

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