The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Acinetobacter baylyi ADP1

Kingdom
Bacteria
Phylum
Proteobacteria
Class
Gamma-proteobacteria
Type
Gram negative
Strain
ADP1
Origin (Details)
Unencapsulated mutant derived from ATCC 33304 (According to ATCC). Parent strain comes from soil.
Origin (Category)
Lab-made derivative
Genome Sequenced
Yes
Synonyms
Acinetobacter calcoaceticus
Empirical Data

Utilizible (lignin-derived) carbon sources (12) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
4-hydroxybenzoic acid Salvachúa et al (2015)
Fischer et al (2008) 		-
alkali lignin Salvachúa et al (2015) (from corn stover; ~20% lignin conversion, including Klason lignin and monomers)
benzaldehyde Collier et al (1997) -
benzoic acid Collier et al (1997) -
benzyl alcohol Collier et al (1997) -
caffeic acid Fischer et al (2008) -
catechol Collier et al (1997) -
cis,cis-muconic acid Collier et al (1997) -
ferulic acid Salvachúa et al (2015)
Fischer et al (2008) 		-
p-coumaric acid Salvachúa et al (2015)
Fischer et al (2008) 		-
protocatechuic acid Fischer et al (2008) -
vanillic acid Salvachúa et al (2015)
Fischer et al (2008) 		-

Pathways (3) Empirical

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Pathway Name Reference(s)
benzoic acid Collier et al (1997)
beta-ketoadipate (all branches) Bleichrodt et al (2010)
caffeic acid Ishiyama et al (2004)

Enzymes (4) Empirical

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Enzyme Gene(s) Reference(s)
caffeate coenzyme A ligase - -
catechol 1,2-dioxygenase - Bleichrodt et al (2010)
enoyl-CoA hydratase/lyase Ab_hcaA Smith et al (2003)
hydroxybenzaldehyde dehydrogenase Ab_hcaB Perez-Pantoja2010

Transporters (4) Empirical

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Transporter Reference
Ab_benKp Collier et al (1997)
Ab_mucKp Williams et al (1997)
Ab_vanKp D’Argenio et al (1999)
Ab_pcaKp D’Argenio et al (1999)

Genes (7) Empirical

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Gene Name Reference(s)
Ab_benK Collier et al (1997)
Ab_hcaA Smith et al (2003)
Ab_hcaB Perez-Pantoja2010
Ab_hcaC Smith et al (2003)
Ab_mucK Williams et al (1997)
Ab_pcaK D’Argenio et al (1999)
Ab_vanK D’Argenio et al (1999)
Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Acinetobacter baylyi ADP1 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
beta-ketoadipate: Catechol branch beta-ketoadipate branch catechol, cis,cis-muconic acid Collier et al (1997)
beta-ketoadipate: Protocatechuate branch beta-ketoadipate branch protocatechuic acid Fischer et al (2008)
catechol meta-cleavage catechol meta-cleavage branch catechol Collier et al (1997)
ferulic acid coniferyl branch ferulic acid Salvachúa et al (2015), Fischer et al (2008)
guaiacol coniferyl branch vanillic acid Salvachúa et al (2015), Fischer et al (2008)
p-coumaric acid p-coumaric branch 4-hydroxybenzoic acid, p-coumaric acid Salvachúa et al (2015), Fischer et al (2008)
protocatechuate 2,3-cleavage protocatechuate 2,3-cleavage branch protocatechuic acid Fischer et al (2008)
protocatechuate 4,5-cleavage beta-ketoadipate branch protocatechuic acid Fischer et al (2008)
vanillin I coniferyl branch vanillic acid Salvachúa et al (2015), Fischer et al (2008)
vanillin II coniferyl branch vanillic acid Salvachúa et al (2015), Fischer et al (2008)

Predicted enzymes in Acinetobacter baylyi ADP1 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme Inferred via pathway Reference
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase benzoic acid Collier et al (1997)
3-carboxy-cis,cis-muconate cycloisomerase beta-ketoadipate (all branches) Bleichrodt et al (2010)
3-oxoadipate enol-lactonase beta-ketoadipate (all branches) Bleichrodt et al (2010)
4-carboxymuconolactone decarboxylase beta-ketoadipate (all branches) Bleichrodt et al (2010)
Benzoate 1,2-dioxygenase benzoic acid Collier et al (1997)
Protocatechuate 3,4-dioxygenase beta-ketoadipate (all branches) Bleichrodt et al (2010)
muconate cycloisomerase beta-ketoadipate (all branches) Bleichrodt et al (2010)
muconolactone isomerase beta-ketoadipate (all branches) Bleichrodt et al (2010)

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

Strain Status Reference
ADP1 Yes Barbe (2004)

Other Databases

Database Comment
GenBank Genome sequence database
NCBI Taxonomy Taxonomy database

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