The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Candida parapsilosis CBS604

Kingdom
Fungi
Phylum
Ascomycota
Class
-
Type
Yeast
Strain
CBS604
Origin (Details)
Pathogen
Origin (Category)
Clinical isolate
Genome Sequenced
Yes; Strain CDC 317
Synonyms
Mycotorula parapsilopsis
Mycocandida parapsilosis
Monilia parapsilosis
Empirical Data

Utilizible (lignin-derived) carbon sources (7) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
2,4-dihydroxybenzoic acid Middelhoven et al (1992)
Gérecová et al (2015) 		-
3-hydroxybenzoic acid Middelhoven et al (1992)
Gérecová et al (2015) 		-
4-hydroxybenzoic acid Middelhoven et al (1992)
Gérecová et al (2015) 		-
gentisic acid Middelhoven (1993)
Gérecová et al (2015) 		-
hydroquinone Middelhoven (1993)
Gérecová et al (2015) 		-
protocatechuic acid Middelhoven (1993)
Gérecová et al (2015) 		-
resorcinol Middelhoven (1993)
Gérecová et al (2015) 		-

Pathways (2) Empirical

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Pathway Name Reference(s)
beta-ketoadipate (all branches) Holesova et al (2011)
gentisate-cleavage Holesova et al (2011)

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Candida parapsilosis CBS604 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
beta-ketoadipate: Protocatechuate branch beta-ketoadipate branch protocatechuic acid Middelhoven (1993), Gérecová et al (2015)
m-cresol gentisate branch 3-hydroxybenzoic acid Middelhoven et al (1992), Gérecová et al (2015)
p-coumaric acid p-coumaric branch 4-hydroxybenzoic acid Middelhoven et al (1992), Gérecová et al (2015)
protocatechuate 2,3-cleavage protocatechuate 2,3-cleavage branch protocatechuic acid Middelhoven (1993), Gérecová et al (2015)
protocatechuate 4,5-cleavage beta-ketoadipate branch protocatechuic acid Middelhoven (1993), Gérecová et al (2015)
resorcinol resorcinol branch resorcinol Middelhoven (1993), Gérecová et al (2015)

Predicted enzymes in Candida parapsilosis CBS604 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme Inferred via pathway Reference
3-carboxy-cis,cis-muconate cycloisomerase beta-ketoadipate (all branches) Holesova et al (2011)
3-oxoadipate enol-lactonase beta-ketoadipate (all branches) Holesova et al (2011)
4-carboxymuconolactone decarboxylase beta-ketoadipate (all branches) Holesova et al (2011)
Protocatechuate 3,4-dioxygenase beta-ketoadipate (all branches) Holesova et al (2011)
catechol 1,2-dioxygenase beta-ketoadipate (all branches) Holesova et al (2011)
fumarylpyruvate hydrolase gentisate-cleavage Holesova et al (2011)
gentisate 1,2-dioxygenase gentisate-cleavage Holesova et al (2011)
maleylpyruvate isomerase (mycothiol-dependent) gentisate-cleavage Holesova et al (2011)
muconate cycloisomerase beta-ketoadipate (all branches) Holesova et al (2011)
muconolactone isomerase beta-ketoadipate (all branches) Holesova et al (2011)

Culture Collections

Strain Depository ID
CBS604 CBS604

Genome Sequencing

Strain Status Reference
CBS604 Yes; Strain CDC 317 Butler et al (2009)

Other Databases

Database Comment
Candida Genome Database Genome sequence database
NCBI Taxonomy Taxonomy database

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