The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Cupriavidus necator JMP134

Kingdom
Bacteria
Phylum
Proteobacteria
Class
Beta-proteobacteria
Type
Gram negative
Strain
JMP134
Origin (Details)
Soil
Origin (Category)
Soil
Genome Sequenced
Yes
Synonyms
Ralstonia eutropha
Wautersia eutropha
Alcaligenes eutrophus
Empirical Data

Utilizible (lignin-derived) carbon sources (11) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
4-chlorocatechol Pérez-Pantoja et al (2008) -
4-hydroxybenzoic acid Salvachúa et al (2015)
Pérez-Pantoja et al (2008) 		-
benzaldehyde Pérez-Pantoja et al (2008) -
benzoic acid Pérez-Pantoja et al (2008) -
benzyl alcohol Pérez-Pantoja et al (2008) -
caffeic acid Pérez-Pantoja et al (2008) -
catechol Pérez-Pantoja et al (2008) -
cinnamic acid Pérez-Pantoja et al (2008) -
ferulic acid Pérez-Pantoja et al (2008) -
p-coumaric acid Pérez-Pantoja et al (2008) -
protocatechuic acid Pérez-Pantoja et al (2008) -

Pathways (2) Empirical

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Pathway Name Reference(s)
beta-ketoadipate (all branches) Pérez-Pantoja et al (2008)
catechol meta-cleavage Pérez-Pantoja et al (2008)

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Cupriavidus necator JMP134 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
benzoic acid benzoyl branch benzoic acid Pérez-Pantoja et al (2008)
beta-ketoadipate: Catechol branch beta-ketoadipate branch catechol Pérez-Pantoja et al (2008)
beta-ketoadipate: Protocatechuate branch beta-ketoadipate branch protocatechuic acid Pérez-Pantoja et al (2008)
caffeic acid caffeic acid branch caffeic acid Pérez-Pantoja et al (2008)
ferulic acid coniferyl branch ferulic acid Pérez-Pantoja et al (2008)
p-coumaric acid p-coumaric branch 4-hydroxybenzoic acid, p-coumaric acid Salvachúa et al (2015), Pérez-Pantoja et al (2008)
protocatechuate 2,3-cleavage protocatechuate 2,3-cleavage branch protocatechuic acid Pérez-Pantoja et al (2008)
protocatechuate 4,5-cleavage beta-ketoadipate branch protocatechuic acid Pérez-Pantoja et al (2008)

Predicted enzymes in Cupriavidus necator JMP134 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme Inferred via pathway Reference
2-hydroxymuconate-6-semialdehyde hydrolase catechol meta-cleavage Pérez-Pantoja et al (2008)
2-oxopent-4-enoate hydratase catechol meta-cleavage Pérez-Pantoja et al (2008)
3-carboxy-cis,cis-muconate cycloisomerase beta-ketoadipate (all branches) Pérez-Pantoja et al (2008)
3-oxoadipate enol-lactonase beta-ketoadipate (all branches) Pérez-Pantoja et al (2008)
4-carboxymuconolactone decarboxylase beta-ketoadipate (all branches) Pérez-Pantoja et al (2008)
4-hydroxy-2-oxovalerate aldolase catechol meta-cleavage Pérez-Pantoja et al (2008)
Protocatechuate 3,4-dioxygenase beta-ketoadipate (all branches) Pérez-Pantoja et al (2008)
catechol 1,2-dioxygenase beta-ketoadipate (all branches) Pérez-Pantoja et al (2008)
catechol 2,3-dioxygenase catechol meta-cleavage Pérez-Pantoja et al (2008)
muconate cycloisomerase beta-ketoadipate (all branches) Pérez-Pantoja et al (2008)
muconolactone isomerase beta-ketoadipate (all branches) Pérez-Pantoja et al (2008)

Culture Collections

Strain Depository ID
JMP134 NCIMB 12592

Genome Sequencing

Strain Status Reference
JMP134 Yes Lykidis et al (2010)

Other Databases

Database Comment
NCBI Taxonomy Taxonomy database

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