The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Sinorhizobium meliloti Rm1021

Kingdom
Bacteria
Phylum
Proteobacteria
Class
Alpha-proteobacteria
Type
Gram negative
Strain
Rm1021
Origin (Details)
Soil
Origin (Category)
Soil
Genome Sequenced
-
Synonyms
Rhizobium meliloti
Empirical Data

Utilizible (lignin-derived) carbon sources (1) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
protocatechuic acid MacLean et al (2006) -

Pathways (1) Empirical

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Pathway Name Reference(s)
beta-ketoadipate: Protocatechuate branch MacLean et al (2006)

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Sinorhizobium meliloti Rm1021 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
beta-ketoadipate (all branches) beta-ketoadipate branch protocatechuic acid MacLean et al (2006)
protocatechuate 2,3-cleavage protocatechuate 2,3-cleavage branch protocatechuic acid MacLean et al (2006)
protocatechuate 4,5-cleavage beta-ketoadipate branch protocatechuic acid MacLean et al (2006)

Predicted enzymes in Sinorhizobium meliloti Rm1021 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme Inferred via pathway Reference
3-carboxy-cis,cis-muconate cycloisomerase beta-ketoadipate: Protocatechuate branch MacLean et al (2006)
3-oxoadipate enol-lactonase beta-ketoadipate: Protocatechuate branch MacLean et al (2006)
4-carboxymuconolactone decarboxylase beta-ketoadipate: Protocatechuate branch MacLean et al (2006)
Protocatechuate 3,4-dioxygenase beta-ketoadipate: Protocatechuate branch MacLean et al (2006)

Culture Collections

Strain Depository ID
Rm1021 ATCC 51124

Genome Sequencing

No genome sequencing information available for this organism.

Other Databases

Database Comment
NCBI Taxonomy Taxonomy database

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