The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Acinetobacter radioresistens S13

Kingdom
Bacteria
Phylum
Proteobacteria
Class
Gamma-proteobacteria
Type
Gram negative
Strain
S13
Origin (Details)
Activated sludge
Origin (Category)
Wastewater sludge
Genome Sequenced
Yes; Strain DSM 6976
Empirical Data

Utilizible (lignin-derived) carbon sources (2) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
benzoic acid Mazzoli et al (2007) -
phenol Mazzoli et al (2007) -

Pathways (1) Empirical

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Pathway Name Reference(s)
beta-ketoadipate (all branches) Mazzoli et al (2007)

Enzymes (1) Empirical

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Enzyme Gene(s) Reference(s)
catechol 1,2-dioxygenase - Mazzoli et al (2007)

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Acinetobacter radioresistens S13 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
benzoic acid benzoyl branch benzoic acid Mazzoli et al (2007)
phenol phenol branch phenol Mazzoli et al (2007)

Predicted enzymes in Acinetobacter radioresistens S13 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme Inferred via pathway Reference
3-carboxy-cis,cis-muconate cycloisomerase beta-ketoadipate (all branches) Mazzoli et al (2007)
3-oxoadipate enol-lactonase beta-ketoadipate (all branches) Mazzoli et al (2007)
4-carboxymuconolactone decarboxylase beta-ketoadipate (all branches) Mazzoli et al (2007)
Protocatechuate 3,4-dioxygenase beta-ketoadipate (all branches) Mazzoli et al (2007)
muconate cycloisomerase beta-ketoadipate (all branches) Mazzoli et al (2007)
muconolactone isomerase beta-ketoadipate (all branches) Mazzoli et al (2007)

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

Strain Status Reference
S13 Yes; Strain DSM 6976 (GenBank: ASM24811v2) -

Other Databases

Database Comment
GenBank Genome sequence database
NCBI Taxonomy Taxonomy database

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