The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Acetobacterium woodii NZva16

Kingdom
Bacteria
Phylum
Firmicutes
Class
-
Type
Gram positive
Strain
NZva16
Origin (Details)
Anaerobic mud samples from waste water lagoons, New Zealand
Origin (Category)
Sediment
Genome Sequenced
-
Empirical Data

Utilizible (lignin-derived) carbon sources (15) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Pathways (0) Empirical

No pathways listed for this organism.

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Acetobacterium woodii NZva16 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
beta-ketoadipate (all branches) beta-ketoadipate branch catechol, protocatechuic acid Bache et al (1981)
beta-ketoadipate: Catechol branch beta-ketoadipate branch catechol Bache et al (1981)
beta-ketoadipate: Protocatechuate branch beta-ketoadipate branch protocatechuic acid Bache et al (1981)
caffeic acid caffeic acid branch caffeic acid Tschech et al (1984)
catechol meta-cleavage catechol meta-cleavage branch catechol Bache et al (1981)
ferulic acid coniferyl branch ferulic acid Bache et al (1981)
guaiacol coniferyl branch vanillic acid Bache et al (1981)
p-coumaric acid p-coumaric branch 4-hydroxybenzoic acid Bache et al (1981)
phenol phenol branch phenol Bache et al (1981)
protocatechuate 2,3-cleavage protocatechuate 2,3-cleavage branch protocatechuic acid Bache et al (1981)
protocatechuate 4,5-cleavage beta-ketoadipate branch protocatechuic acid Bache et al (1981)
salicylic acid I benzoyl branch salicylic acid Bache et al (1981)
salicylic acid II gentisate branch salicylic acid Bache et al (1981)
sinapic acid sinapyl branch sinapic acid, syringaldehyde Bache et al (1981)
syringic acid I sinapyl branch gallic acid, syringic acid Bache et al (1981)
syringic acid II sinapyl branch syringic acid Bache et al (1981)
syringic acid III sinapyl branch syringic acid Bache et al (1981)
vanillin I coniferyl branch vanillic acid, vanillin Bache et al (1981)
vanillin II coniferyl branch vanillic acid, vanillin Bache et al (1981)

Predicted enzymes in Acetobacterium woodii NZva16 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

No enzymes predicted from confirmed pathways for this organism.

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

No genome sequencing information available for this organism.

Other Databases

Database Comment
NCBI Taxonomy Taxonomy database

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