The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Corynebacterium glutamicum ATCC13032

Kingdom
Bacteria
Phylum
Actinobacteria
Class
-
Type
Gram positive
Strain
ATCC13032
Origin (Details)
Soil
Origin (Category)
Soil
Genome Sequenced
Yes
Empirical Data

Utilizible (lignin-derived) carbon sources (7) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
3-hydroxybenzoic acid Shen et al (2005) -
4-cresol Qi et al (2007) -
catechol Qi et al (2007) -
corn stover lignin Rodriguez2017 (base-catalyzed depolymerized corn stover)
gentisic acid Qi et al (2007) -
protocatechuic acid Qi et al (2007) -
resorcinol Qi et al (2007) -

Pathways (11) Empirical

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Pathway Name Reference(s)
benzoic acid Shen et al (2012)
beta-ketoadipate (all branches) Qi et al (2007)
beta-ketoadipate: Catechol branch Shen et al (2012)
beta-ketoadipate: lower branch Shen et al (2012)
beta-ketoadipate: Protocatechuate branch Shen et al (2012)
caffeic acid Shen et al (2012)
ferulic acid Shen et al (2012)
gentisate-cleavage Shen et al (2005)
p-coumaric acid Shen et al (2012)
resorcinol Huang et al (2006)
vanillin I Shen et al (2012)

Enzymes (8) Empirical

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Enzyme Gene(s) Reference(s)
3-hydroxybenzoate 6-hydroxylase Cg_nahG Yang et al (2010)
fumarylpyruvate hydrolase Cg_nagK Shen et al (2005)
hydroxyquinol 1,2-dioxygenase I Cgl1160 Shen et al (2005)
hydroxyquinol 1,2-dioxygenase II Cgl3056 Shen et al (2005)
maleylacetate reductase I - -
maleylacetate reductase II Cgl3057 Huang et al (2006)
maleylpyruvate isomerase (mycothiol-dependent) Cg_nagL Shen et al (2005)
resorcinol 4-hydroxylase Cgl1158 Huang et al (2006)

Transporters (5) Empirical

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Transporter Reference
Cg_nagTp Xu et al (2006)
Cg_pcaKp Chaudhry et al (2007)
Cg_vanKp Chaudhry et al (2007)
Cg_benEp Chaudhry et al (2007)
Cg_benKp Chaudhry et al (2007)

Genes (14) Empirical

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Gene Name Reference(s)
Cg_benE Chaudhry et al (2007)
Cg_benK Chaudhry et al (2007)
Cg_nagI Shen et al (2005)
Cg_nagK Shen et al (2005)
Cg_nagL Shen et al (2005)
Cg_nagT Xu et al (2006)
Cg_nahG Yang et al (2010)
Cg_pcaK Chaudhry et al (2007)
Cg_vanK Chaudhry et al (2007)
Cgl1158 Huang et al (2006)
Cgl1159 Huang et al (2006)
Cgl1160 Shen et al (2005)
Cgl3056 Shen et al (2005)
Cgl3057 Huang et al (2006)
Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Corynebacterium glutamicum ATCC13032 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
catechol meta-cleavage catechol meta-cleavage branch catechol Qi et al (2007)
m-cresol gentisate branch 3-hydroxybenzoic acid Shen et al (2005)
p-cresol p-coumaric branch 4-cresol Qi et al (2007)
protocatechuate 2,3-cleavage protocatechuate 2,3-cleavage branch protocatechuic acid Qi et al (2007)
protocatechuate 4,5-cleavage beta-ketoadipate branch protocatechuic acid Qi et al (2007)

Predicted enzymes in Corynebacterium glutamicum ATCC13032 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme Inferred via pathway Reference
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase benzoic acid Shen et al (2012)
3-carboxy-cis,cis-muconate cycloisomerase beta-ketoadipate: Protocatechuate branch Shen et al (2012)
3-oxoadipate enol-lactonase beta-ketoadipate: Protocatechuate branch Shen et al (2012)
4-carboxymuconolactone decarboxylase beta-ketoadipate: Protocatechuate branch Shen et al (2012)
4-hydroxybenzaldehyde dehydrogenase p-coumaric acid Shen et al (2012)
4-hydroxybenzoate 3-monooxygenase p-coumaric acid Shen et al (2012)
Benzoate 1,2-dioxygenase benzoic acid Shen et al (2012)
Feruloyl-CoA synthase ferulic acid Shen et al (2012)
Protocatechuate 3,4-dioxygenase beta-ketoadipate: Protocatechuate branch Shen et al (2012)
Vanillate monooxygenase vanillin I Shen et al (2012)
Vanillin dehydrogenase vanillin I Shen et al (2012)
caffeate coenzyme A ligase caffeic acid Shen et al (2012)
caffeate coenzyme A ligase p-coumaric acid Shen et al (2012)
catechol 1,2-dioxygenase beta-ketoadipate: Catechol branch Shen et al (2012)
enoyl-CoA hydratase/lyase caffeic acid Shen et al (2012)
enoyl-CoA hydratase/lyase p-coumaric acid Shen et al (2012)
gentisate 1,2-dioxygenase gentisate-cleavage Shen et al (2005)
hydroxybenzaldehyde dehydrogenase caffeic acid Shen et al (2012)
muconate cycloisomerase beta-ketoadipate: Catechol branch Shen et al (2012)
muconolactone isomerase beta-ketoadipate: Catechol branch Shen et al (2012)
trans-feruloyl-CoA hydratase ferulic acid Shen et al (2012)

Culture Collections

Strain Depository ID
ATCC13032 ATCC 13032
ATCC13032 NCIMB 10025

Genome Sequencing

Strain Status Reference
ATCC13032 Yes Kalinowski et al (2003)

Other Databases

Database Comment
NCBI Taxonomy Taxonomy database

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