The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Candida tropicalis HP15

Kingdom
Fungi
Phylum
Ascomycota
Class
-
Type
Yeast
Strain
HP15
Origin (Details)
Obtained from the culture collection of the Department of Biosciences, Martin-Luther-University, Halle, Germany
Origin (Category)
Unknown or Not Specified
Genome Sequenced
Yes; strain MYA3404
Empirical Data

Utilizible (lignin-derived) carbon sources (5) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
catechol Krug et al (1985) -
hydroquinone Krug et al (1985) -
hydroxyquinol Krug et al (1985) -
phenol Krug et al (1985) -
resorcinol Krug et al (1985) -

Pathways (1) Empirical

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Pathway Name Reference(s)
beta-ketoadipate (all branches) Krug et al (1985)

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Candida tropicalis HP15 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
beta-ketoadipate: Catechol branch beta-ketoadipate branch catechol Krug et al (1985)
catechol meta-cleavage catechol meta-cleavage branch catechol Krug et al (1985)
phenol phenol branch phenol Krug et al (1985)
resorcinol resorcinol branch hydroxyquinol, resorcinol Krug et al (1985)

Predicted enzymes in Candida tropicalis HP15 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme Inferred via pathway Reference
3-carboxy-cis,cis-muconate cycloisomerase beta-ketoadipate (all branches) Krug et al (1985)
3-oxoadipate enol-lactonase beta-ketoadipate (all branches) Krug et al (1985)
4-carboxymuconolactone decarboxylase beta-ketoadipate (all branches) Krug et al (1985)
Protocatechuate 3,4-dioxygenase beta-ketoadipate (all branches) Krug et al (1985)
catechol 1,2-dioxygenase beta-ketoadipate (all branches) Krug et al (1985)
muconate cycloisomerase beta-ketoadipate (all branches) Krug et al (1985)
muconolactone isomerase beta-ketoadipate (all branches) Krug et al (1985)

Culture Collections

No culture collection information available for this organism.

Genome Sequencing

Strain Status Reference
HP15 Yes; strain MYA3404 Butler et al (2009)

Other Databases

Database Comment
Candida Genome Database Genome sequence database
NCBI Taxonomy Taxonomy database

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