The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

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Rhodotorula rubra IFO 889

Kingdom
Fungi
Phylum
Basidiomycota
Class
-
Type
Yeast
Strain
IFO 889
Origin (Details)
-
Origin (Category)
Unknown or Not Specified
Genome Sequenced
-
Empirical Data

Utilizible (lignin-derived) carbon sources (4) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

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Substrate Reference(s) Comment(s)
ferulic acid Huang et al (1993) -
guaiacol Huang et al (1993) -
protocatechuic acid Huang et al (1993) -
vanillic acid Huang et al (1993) -

Pathways (2) Empirical

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Pathway Name Reference(s)
ferulic acid Huang et al (1993)
guaiacol Huang et al (1993)

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Predicted pathways in Rhodotorula rubra IFO 889 Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

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Predicted pathway Funneling branch Inferred via substrate Reference
beta-ketoadipate (all branches) beta-ketoadipate branch protocatechuic acid Huang et al (1993)
beta-ketoadipate: Protocatechuate branch beta-ketoadipate branch protocatechuic acid Huang et al (1993)
protocatechuate 2,3-cleavage protocatechuate 2,3-cleavage branch protocatechuic acid Huang et al (1993)
protocatechuate 4,5-cleavage beta-ketoadipate branch protocatechuic acid Huang et al (1993)
vanillin I coniferyl branch vanillic acid Huang et al (1993)
vanillin II coniferyl branch vanillic acid Huang et al (1993)

Predicted enzymes in Rhodotorula rubra IFO 889 Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

Predicted enzyme Inferred via pathway Reference
Feruloyl-CoA synthase ferulic acid Huang et al (1993)
P450 aryl-O-demethylase guaiacol Huang et al (1993)
non-oxidative vanillate decarboxylase guaiacol Huang et al (1993)
trans-feruloyl-CoA hydratase ferulic acid Huang et al (1993)

Culture Collections

Strain Depository ID
IFO 889 NBRC 889 (IFO 0889)

Genome Sequencing

No genome sequencing information available for this organism.

Other Databases

Database Comment
NCBI Taxonomy Taxonomy database

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