The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

brinkdp/eLignin 0 0

Oceanimonas doudoroffii JCM21046T

Kingdom
Bacteria
Phylum
Proteobacteria
Class
Gamma-proteobacteria
Type
Gram negative
Strain
JCM21046T
Origin (Details)
Marine
Origin (Category)
Aquatic
Genome Sequenced
-
Synonyms
Pseudomonas doudoroffii
Empirical Data

Utilizible (lignin-derived) carbon sources (11) Empirical

NB! Always check the primary references for the experimental details; "utilizable" does not necessarily equal "growth-supporting".

📥 Download as TSV
Substrate Reference(s) Comment(s)
3-hydroxybenzoic acid Numata et al (2015) -
4-hydroxybenzoic acid Numata et al (2015) -
caffeic acid Numata et al (2015) -
ferulic acid Numata et al (2015) -
gallic acid Numata et al (2015) -
gentisic acid Numata et al (2015) -
p-coumaric acid Numata et al (2015) -
protocatechuic acid Numata et al (2015) -
sinapic acid Numata et al (2015) -
syringic acid Numata et al (2015) -
vanillic acid Numata et al (2015) -

Pathways (0) Empirical

No pathways listed for this organism.

Enzymes (0) Empirical

No enzymes listed for this organism.

Transporters (0) Empirical

No transporters listed for this organism.

Genes (0) Empirical

No genes listed for this organism.

Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
Predicted sections are hidden. Show them

Predicted pathways in Oceanimonas doudoroffii JCM21046T Predicted

Inferred from reported utilizable carbon sources: if the organism can utilise a compound that enters a pathway as a reactant, it may carry that pathway. Not experimentally verified. What does this mean?

📥 Download as TSV
Predicted pathway Funneling branch Inferred via substrate Reference
beta-ketoadipate (all branches) beta-ketoadipate branch protocatechuic acid Numata et al (2015)
beta-ketoadipate: Protocatechuate branch beta-ketoadipate branch protocatechuic acid Numata et al (2015)
caffeic acid caffeic acid branch caffeic acid Numata et al (2015)
ferulic acid coniferyl branch ferulic acid Numata et al (2015)
gentisate-cleavage gentisate branch gentisic acid Numata et al (2015)
guaiacol coniferyl branch vanillic acid Numata et al (2015)
m-cresol gentisate branch 3-hydroxybenzoic acid Numata et al (2015)
p-coumaric acid p-coumaric branch 4-hydroxybenzoic acid, p-coumaric acid Numata et al (2015)
protocatechuate 2,3-cleavage protocatechuate 2,3-cleavage branch protocatechuic acid Numata et al (2015)
protocatechuate 4,5-cleavage beta-ketoadipate branch protocatechuic acid Numata et al (2015)
sinapic acid sinapyl branch sinapic acid Numata et al (2015)
syringic acid I sinapyl branch gallic acid, syringic acid Numata et al (2015)
syringic acid II sinapyl branch syringic acid Numata et al (2015)
syringic acid III sinapyl branch syringic acid Numata et al (2015)
vanillin I coniferyl branch vanillic acid Numata et al (2015)
vanillin II coniferyl branch vanillic acid Numata et al (2015)

Predicted enzymes in Oceanimonas doudoroffii JCM21046T Predicted

Inferred from confirmed pathways: if the organism is confirmed to carry a pathway, enzymes known to catalyse reactions in that pathway are predicted to be present. The pathway used for each inference is shown. Not experimentally verified. What does this mean?

No enzymes predicted from confirmed pathways for this organism.

Culture Collections

Strain Depository ID
JCM21046T JCM 21046

Genome Sequencing

No genome sequencing information available for this organism.

Other Databases

No external database links are available for this organism.

← Back to Organisms List