The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

brinkdp/eLignin 0 0

Funneling pathway: phenol

Full Name
phenol
Funneling Branch
phenol branch

Pathway Network Visualization 📥 Export BioPAX JSON-LD

Interactive metabolic pathway map showing compounds (text labels) connected by reaction arrows. Click arrows to view reaction details, click compounds to view substrate details. Zoom with mouse wheel, pan by dragging.

Empirical Data

Organisms with this Pathway Empirical

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Organism Strain Reference(s)
Cupriavidus basilensis B-8 Shi et al (2013)
Rhodococcus opacus PD630 (DSMZ 44193) Henson et al (2018)
Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Organisms predicted for this pathway Predicted

Inferred from reported substrate utilization: organisms that can utilise a compound entering this pathway as a reactant are predicted to carry the pathway, unless already confirmed. The reference confirming substrate use is shown. Not experimentally verified. What does this mean?

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Predicted organism Strain Inferred via substrate Reference
Acetobacterium woodii NZva16 phenol Bache et al (1981)
Acinetobacter radioresistens S13 phenol Mazzoli et al (2007)
Acinetobacter tandoii Van Dexter isolate phenol Van Dexter et al (2018)
Amycolatopsis sp. 75iv2 (ATCC 39116) phenol Antai et al (1983), Barton et al (2018)
Aromatoleum aromaticum EbN1 phenol Wöhlbrand et al (2007)
Azoarcus anaerobius LuFRes1 phenol Gorny et al (1992)
Azotobacter vinelandii ATCC 12837 phenol Groseclose et al (1981)
Burkholderia cepacia KK01 phenol Kato et al (1998)
Candida albicans CBS562 phenol Gérecová et al (2015)
Candida dubliniensis CBS7987 phenol Gérecová et al (2015)
Candida maltosa Fialova isolate phenol Fialová et al (2004)
Candida tropicalis CBS94 phenol Gérecová et al (2015)
Candida tropicalis HP15 phenol Krug et al (1985)
Comamonas testosteroni BR6020 phenol Providenti et al (2001)
Comamonas testosteroni CNB-1 phenol Ni et al (2012)
Cryptococcus terreus PB4 phenol Bergauer et al (2005)
Cupriavidus laharis 1263a phenol Sato et al (2006)
Cupriavidus necator ATCC 17697 phenol Hughes et al (1983)
Cupriavidus pinatubonensis 1245 phenol Sato et al (2006)
Desulfobacterium phenolicum Ph01 phenol Bak et al (1986)
Exophiala jeanselmei CBS 658.76 phenol Middelhoven (1993)
Leucosporidium scottii G43 phenol Middelhoven (1993)
Marinobacterium georgiense KW-40 phenol GONZaLEZ et al (1997)
Mastigobasidium intermedium PB8 phenol Bergauer et al (2005)
Microbotryomycetidae sp. AG15 phenol Bergauer et al (2005)
Natrialba sp. C21 phenol Khemili-Talbi et al (2015)
Novosphingobium taihuense T3-B9 phenol Liu et al (2005)
Pandoraea norimbergensis LD001 phenol Bandounas et al (2011)
Petriellidium boydii SP 31-4 phenol Eriksson et al (1984)
Phanerochaete chrysosporium ATCC 34541 phenol Nakamura et al (2011)
Pseudomonas fluorescens PU1 phenol Mahiudddin et al (2012)
Rhodococcus erythropolis 1CP phenol Eulberg et al (1997)
Rhodococcus erythropolis TA421 phenol Chung et al (1994)
Rhodococcus jostii RHA1 phenol Otani et al (2014)
Rhodococcus rhodochrous 116 phenol Karlson et al (1993)
Rhodococcus sp. UKMP-5M phenol Suhaila et al (2013)
Rhodosporidium lusitaniae PB14 phenol Bergauer et al (2005)
Rhodotorula creatinivora PB7 phenol Bergauer et al (2005)
Rhodotorula ingeniosa PB5 phenol Bergauer et al (2005)
Thauera aromatica K172 phenol Tschech et al (1987)
Thauera sp. Cin3,4 phenol Mechichi et al (2005)
Trametes versicolor Strain 1 phenol Alexieva et al (2010)
Trichosporon cutaneum CBS2466 phenol Middelhoven (1993)
Trichosporon mucoides SBUG 80 phenol Sietmann et al (2001)
Trichosporon oleaginosus ATCC 20509 phenol Yaguchi et al (2017)

Predicted enzyme assignments for confirmed organisms Predicted

Inferred from confirmed pathway membership: if an organism is confirmed to carry this pathway, enzymes known to catalyse reactions within it are predicted to be present. The reference confirming the organism’s membership of this pathway is shown. Not experimentally verified. What does this mean?

Organism Strain Predicted enzyme Reference confirming pathway
Cupriavidus basilensis B-8 vanillin synthase Shi et al (2013)
Rhodococcus opacus PD630 (DSMZ 44193) vanillin synthase Henson et al (2018)

Reactions in this Pathway

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Order Substrates Products Enzyme(s) Reaction
1 phenol → catechol vanillin synthase R00026

Compounds (Substrates & Products)

Intermediate metabolites that are not registered in the Substrate table are shown as plain text without a hyperlink.

Compound Name Formula SMILES PubChem Role
phenol C6H6O C1=CC=C(C=C1)O 996 substrate
catechol C6H6O2 C1=CC=C(C(=C1)O)O 289 product

Connected Pathways

Outgoing Connections (This pathway connects to:)

Connected Pathway Connecting Compound
Fission pathway: beta-ketoadipate: Catechol branch catechol
Fission pathway: catechol meta-cleavage catechol

Genes

No genes defined in this pathway's BioPAX snapshot.

Other Databases

Database Comment
MetaCyc Metabolic pathway database

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