The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

brinkdp/eLignin 0 0

Funneling pathway: sinapic acid

Full Name
sinapic acid
Funneling Branch
sinapyl branch

Pathway Network Visualization 📥 Export BioPAX JSON-LD

Interactive metabolic pathway map showing compounds (text labels) connected by reaction arrows. Click arrows to view reaction details, click compounds to view substrate details. Zoom with mouse wheel, pan by dragging.

Empirical Data

Organisms with this Pathway Empirical

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Organism Strain Reference(s)
Sphingobium sp. SYK-6 -
Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Organisms predicted for this pathway Predicted

Inferred from reported substrate utilization: organisms that can utilise a compound entering this pathway as a reactant are predicted to carry the pathway, unless already confirmed. The reference confirming substrate use is shown. Not experimentally verified. What does this mean?

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Predicted organism Strain Inferred via substrate Reference
Acetobacterium woodii NZva16 sinapic acid, syringaldehyde Bache et al (1981)
Comamonas sp. B-9 (CGMCC No. 4251) sinapic acid Chen et al (2012)
Oceanimonas doudoroffii JCM21046T sinapic acid Numata et al (2015)
Pandoraea norimbergensis LD001 syringaldehyde Bandounas et al (2011)
Pseudomonas chlororaphis subsp. aureofaciens PT02 syringaldehyde Tian et al (2016)
Pseudomonas mira V2 sinapic acid Jurková et al (1993)
Pseudomonas sp. ITH-SA-1 syringaldehyde Iwabuchi et al (2015)
Pseudomonas sp. LLC-1 syringaldehyde Hirose et al (2020)
Rhodotorula glutinis Jain isolate sinapic acid GUPTA et al (1986)
Serratia liquefaciens sp. PT01 syringaldehyde Tian et al (2016)
Serratia sp. JHT01 syringaldehyde Tian et al (2016)
Sphingomonas aromaticivorans F199 sinapic acid Cecil et al (2018)

Predicted enzyme assignments for confirmed organisms Predicted

Inferred from confirmed pathway membership: if an organism is confirmed to carry this pathway, enzymes known to catalyse reactions within it are predicted to be present. The reference confirming the organism’s membership of this pathway is shown. Not experimentally verified. What does this mean?

No predicted enzyme assignments: all confirmed organisms are already linked to the enzymes of this pathway.

Reactions in this Pathway

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Order Substrates Products Enzyme(s) Reaction
1 sinapic acid → syringaldehyde - R00075
2 syringaldehyde → syringic acid - R00076

Compounds (Substrates & Products)

Intermediate metabolites that are not registered in the Substrate table are shown as plain text without a hyperlink.

Compound Name Formula SMILES PubChem Role
sinapic acid C11H12O5 COC1=CC(=CC(=C1O)OC)C=CC(=O)O 637775 substrate
syringaldehyde C9H10O4 COC1=CC(=CC(=C1O)OC)C=O 8655 product, substrate
syringic acid C9H10O5 COC1=CC(=CC(=C1O)OC)C(=O)O 10742 product

Connected Pathways

No pathway connections are currently defined.

Genes

No genes defined in this pathway's BioPAX snapshot.

Other Databases

No external database links are available for this pathway.

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