The eLignin Microbial Database

A curated resource for microbial metabolism of lignin-derived aromatic compounds

brinkdp/eLignin 0 0

Funneling pathway: coniferyl alcohol

Full Name
coniferyl alcohol
Funneling Branch
coniferyl branch
Gene Ontology
GO:0042856

Pathway Network Visualization 📥 Export BioPAX JSON-LD

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Empirical Data

Organisms with this Pathway Empirical

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Organism Strain Reference(s)
Pseudomonas putida KT2440 Jiménez et al (2002)
Predicted Relationships Hide predicted
The sections below contain relationships inferred from the empirical data above. They are computationally predicted and have not been independently verified. Learn more about data assumptions →
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Organisms predicted for this pathway Predicted

Inferred from reported substrate utilization: organisms that can utilise a compound entering this pathway as a reactant are predicted to carry the pathway, unless already confirmed. The reference confirming substrate use is shown. Not experimentally verified. What does this mean?

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Predicted organism Strain Inferred via substrate Reference
Pseudomonas sp. HR199 coniferyl alcohol, coniferyl aldehyde Overhage et al (1999)
Rhodococcus opacus DSM 1069 coniferyl alcohol Kosa et al (2011), Eggeling et al (1980)
Serratia marcescens C5 coniferyl alcohol Rhoads et al (1995)

Predicted enzyme assignments for confirmed organisms Predicted

Inferred from confirmed pathway membership: if an organism is confirmed to carry this pathway, enzymes known to catalyse reactions within it are predicted to be present. The reference confirming the organism’s membership of this pathway is shown. Not experimentally verified. What does this mean?

No predicted enzyme assignments: all confirmed organisms are already linked to the enzymes of this pathway.

Reactions in this Pathway

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Order Substrates Products Enzyme(s) Reaction
1 coniferyl alcohol → coniferyl aldehyde - R00035
2 coniferyl aldehyde → ferulic acid - R00036

Compounds (Substrates & Products)

Intermediate metabolites that are not registered in the Substrate table are shown as plain text without a hyperlink.

Compound Name Formula SMILES PubChem Role
coniferyl alcohol C10H12O3 COC1=C(C=CC(=C1)C=CCO)O 1549095 substrate
coniferyl aldehyde C10H10O3 COC1=C(C=CC(=C1)C=CC=O)O 5280536 product, substrate
ferulic acid C10H10O4 COC1=C(C=CC(=C1)C=CC(=O)O)O 445858 product

Connected Pathways

Outgoing Connections (This pathway connects to:)

Connected Pathway Connecting Compound
Funneling pathway: ferulic acid ferulic acid

Genes

No genes defined in this pathway's BioPAX snapshot.

Other Databases

No external database links are available for this pathway.

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