Organism Strain Reference(s) Comment(s) Rhodopseudomonas palustris CGA009 Salmon, R. C., Cliff, M. J., Rafferty, J. B., & Kelly, D. J. (2013). The CouPSTU and TarPQM Transporters in Rhodopseudomonas palustris: Redundant, Promiscuous Uptake Systems for Lignin-Derived Aromatic Substrates. PLoS ONE, 8(3), e59844. https://doi.org/10.1371/journal.pone.0059844 - Cupriavidus necator JMP134 Pérez-Pantoja, D., De la Iglesia, R., Pieper, D. H., & González, B. (2008). Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacteriumCupriavidus necatorJMP134. FEMS Microbiology Reviews, 32(5), 736–794. https://doi.org/10.1111/j.1574-6976.2008.00122.x - Fusarium oxysporum 4287 Michielse, C. B., Reijnen, L., Olivain, C., Alabouvette, C., & Rep, M. (2012). Degradation of aromatic compounds through the β‐ketoadipate pathway is required for pathogenicity of the tomato wilt pathogen F usarium oxysporum f. sp. lycopersici. Molecular Plant Pathology, 13(9), 1089–1100. https://doi.org/10.1111/j.1364-3703.2012.00818.x - Serratia marcescens C5 Rhoads, T. L., Mikell Jr., A. T., & Eley, M. H. (1995). Investigation of the lignin-degrading activity of Serratia marcescens: biochemical screening and ultrastructural evidence. Canadian Journal of Microbiology, 41(7), 592–600. https://doi.org/10.1139/m95-079 - Penicillium chrysogenum MUCL 31363 Rodríguez, A., Carnicero, A., Perestelo, F., de la Fuente, G., Milstein, O., & Falcón, M. A. (1994). Effect of Penicillium chrysogenum on Lignin Transformation. Applied and Environmental Microbiology, 60(8), 2971–2976. https://doi.org/10.1128/aem.60.8.2971-2976.1994; Falcón, M., Rodríguez, A., Carnicero, A., Regalado, V., Perestelo, F., Milstein, O., & De la Fuente, G. (1995). Isolation of microorganisms with lignin transformation potential from soil of Tenerife island. Soil Biology and Biochemistry, 27(2), 121–126. https://doi.org/10.1016/0038-0717(94)00174-y - Comamonas sp. B-9 (CGMCC No. 4251) Chen, Y., Chai, L., Zhu, Y., Yang, Z., Zheng, Y., & Zhang, H. (2012). Biodegradation of kraft lignin by a bacterial strain Comamonas sp. B-9 isolated from eroded bamboo slips: Biodegradation of kraft lignin. Journal of Applied Microbiology, 112(5), 900–906. https://doi.org/10.1111/j.1365-2672.2012.05275.x - Rhizobium sp. YS-1r Jackson, C., Couger, M., Prabhakaran, M., Ramachandriya, K., Canaan, P., & Fathepure, B. (2017). Isolation and characterization ofRhizobiumsp. strain YS-1r that degrades lignin in plant biomass. Journal of Applied Microbiology, 122(4), 940–952. https://doi.org/10.1111/jam.13401 - Marinobacterium georgiense KW-40 GONZaLEZ, J. M., MAYER, F., MORAN, M. A., HODSON, R. E., & WHITMAN, W. B. (1997). Microbulbifer hydrolyticus gen. nov., sp. nov., and Marinobacterium georgiense gen. nov., sp. nov., Two Marine Bacteria from a Lignin-Rich Pulp Mill Waste Enrichment Community. International Journal of Systematic Bacteriology, 47(2), 369–376. https://doi.org/10.1099/00207713-47-2-369 - Fusarium oxysporum MUCL 30736 Falcón, M., Rodríguez, A., Carnicero, A., Regalado, V., Perestelo, F., Milstein, O., & De la Fuente, G. (1995). Isolation of microorganisms with lignin transformation potential from soil of Tenerife island. Soil Biology and Biochemistry, 27(2), 121–126. https://doi.org/10.1016/0038-0717(94)00174-y - Fusarium solani MUCL 35071 Falcón, M., Rodríguez, A., Carnicero, A., Regalado, V., Perestelo, F., Milstein, O., & De la Fuente, G. (1995). Isolation of microorganisms with lignin transformation potential from soil of Tenerife island. Soil Biology and Biochemistry, 27(2), 121–126. https://doi.org/10.1016/0038-0717(94)00174-y - Pestalotia oxyanthi MUCL 35070 Falcón, M., Rodríguez, A., Carnicero, A., Regalado, V., Perestelo, F., Milstein, O., & De la Fuente, G. (1995). Isolation of microorganisms with lignin transformation potential from soil of Tenerife island. Soil Biology and Biochemistry, 27(2), 121–126. https://doi.org/10.1016/0038-0717(94)00174-y - Thauera aromatica K172 Tschech, A., & Fuchs, G. (1987). Anaerobic degradation of phenol by pure cultures of newly isolated denitrifying pseudomonads. Archives of Microbiology, 148(3), 213–217. https://doi.org/10.1007/bf00414814 (anaerobically) Papillibacter cinnamivorans CIN1 Defnoun, S., Labat, M., Ambrosio, M., Garcia, J. L., & Patel, B. K. (2000). Papillibacter cinnamivorans gen. nov., sp. nov., a cinnamate-transforming bacterium from a shea cake digester.. International Journal of Systematic and Evolutionary Microbiology, 50(3), 1221–1228. https://doi.org/10.1099/00207713-50-3-1221 (anaerobically) Thauera sp. Cin3,4 Mechichi, T., Patel, B. K., & Sayadi, S. (2005). Anaerobic degradation of methoxylated aromatic compounds by Clostridium methoxybenzovorans and a nitrate-reducing bacterium Thauera sp. strain Cin3,4. International Biodeterioration & Biodegradation, 56(4), 224–230. https://doi.org/10.1016/j.ibiod.2005.09.001 - Rhodopseudomonas palustris CGA001 Harwood, C. S., & Gibson, J. (1988). Anaerobic and aerobic metabolism of diverse aromatic compounds by the photosynthetic bacterium Rhodopseudomonas palustris. Applied and Environmental Microbiology, 54(3), 712–717. https://doi.org/10.1128/aem.54.3.712-717.1988 - Amycolatopsis sp. 75iv2 (ATCC 39116) Sutherland, J. B., Crawford, D. L., & Pometto III, A. L. (1983). Metabolism of cinnamic, p-coumaric, and ferulic acids by Streptomyces setonii. Canadian Journal of Microbiology, 29(10), 1253–1257. https://doi.org/10.1139/m83-195; Barton, N., Horbal, L., Starck, S., Kohlstedt, M., Luzhetskyy, A., & Wittmann, C. (2018). Enabling the valorization of guaiacol-based lignin: Integrated chemical and biochemical production of cis,cis-muconic acid using metabolically engineered Amycolatopsis sp ATCC 39116. Metabolic Engineering, 45, 200–210. https://doi.org/10.1016/j.ymben.2017.12.001 - Haloferax sp. D1227 Emerson, D., Chauhan, S., Oriel, P., & Breznak, J. A. (1994). Haloferax sp. D1227, a halophilic Archaeon capable of growth on aromatic compounds. Archives of Microbiology, 161(6), 445–452. https://doi.org/10.1007/bf00307764 -