Organism	Strain	Reference(s)	Comment(s)
Rhodopseudomonas palustris	CGA009	Salmon, R. C., Cliff, M. J., Rafferty, J. B., & Kelly, D. J. (2013). The CouPSTU and TarPQM Transporters in Rhodopseudomonas palustris: Redundant, Promiscuous Uptake Systems for Lignin-Derived Aromatic Substrates. PLoS ONE, 8(3), e59844. https://doi.org/10.1371/journal.pone.0059844	-
Acinetobacter baylyi	ADP1	Salvachúa, D., Karp, E. M., Nimlos, C. T., Vardon, D. R., & Beckham, G. T. (2015). Towards lignin consolidated bioprocessing: simultaneous lignin depolymerization and product generation by bacteria. Green Chemistry, 17(11), 4951–4967. https://doi.org/10.1039/c5gc01165e; Fischer, R., Bleichrodt, F. S., & Gerischer, U. C. (2008). Aromatic degradative pathways in Acinetobacter baylyi underlie carbon catabolite repression. Microbiology, 154(10), 3095–3103. https://doi.org/10.1099/mic.0.2008/016907-0	-
Oceanimonas doudoroffii	JCM21046T	Numata, K., & Morisaki, K. (2015). Screening of Marine Bacteria To Synthesize Polyhydroxyalkanoate from Lignin: Contribution of Lignin Derivatives to Biosynthesis by Oceanimonas doudoroffii. ACS Sustainable Chemistry &amp; Engineering, 3(4), 569–573. https://doi.org/10.1021/acssuschemeng.5b00031	-
Pseudomonas putida	KT2440	Salvachúa, D., Karp, E. M., Nimlos, C. T., Vardon, D. R., & Beckham, G. T. (2015). Towards lignin consolidated bioprocessing: simultaneous lignin depolymerization and product generation by bacteria. Green Chemistry, 17(11), 4951–4967. https://doi.org/10.1039/c5gc01165e; Ravi, K., García-Hidalgo, J., Gorwa-Grauslund, M. F., & Lidén, G. (2017). Conversion of lignin model compounds by Pseudomonas putida KT2440 and isolates from compost. Applied Microbiology and Biotechnology, 101(12), 5059–5070. https://doi.org/10.1007/s00253-017-8211-y	-
Rhodococcus jostii	RHA1	Salvachúa, D., Karp, E. M., Nimlos, C. T., Vardon, D. R., & Beckham, G. T. (2015). Towards lignin consolidated bioprocessing: simultaneous lignin depolymerization and product generation by bacteria. Green Chemistry, 17(11), 4951–4967. https://doi.org/10.1039/c5gc01165e	-
Cupriavidus necator	JMP134	Pérez-Pantoja, D., De la Iglesia, R., Pieper, D. H., & González, B. (2008). Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacteriumCupriavidus necatorJMP134. FEMS Microbiology Reviews, 32(5), 736–794. https://doi.org/10.1111/j.1574-6976.2008.00122.x	-
Fusarium oxysporum	4287	Michielse, C. B., Reijnen, L., Olivain, C., Alabouvette, C., & Rep, M. (2012). Degradation of aromatic compounds through the β‐ketoadipate pathway is required for pathogenicity of the tomato wilt pathogen <scp>F</scp> usarium oxysporum f. sp. lycopersici. Molecular Plant Pathology, 13(9), 1089–1100. https://doi.org/10.1111/j.1364-3703.2012.00818.x	-
Rhodotorula mucilaginosa	CBS17	Sampaio, J. P. (1999). Utilization of low molecular weight aromatic compounds by heterobasidiomycetous yeasts: taxonomic implications. Canadian Journal of Microbiology, 45(6), 491–512. https://doi.org/10.1139/w99-020	-
Amycolatopsis sp.	75iv2 (ATCC 39116)	Davis, J. R., Goodwin, L. A., Woyke, T., Teshima, H., Bruce, D., Detter, C., Tapia, R., Han, S., Han, J., Pitluck, S., Nolan, M., Mikhailova, N., Land, M. L., & Sello, J. K. (2012). Genome Sequence of Amycolatopsis sp. Strain ATCC 39116, a Plant Biomass-Degrading Actinomycete. Journal of Bacteriology, 194(9), 2396–2397. https://doi.org/10.1128/jb.00186-12; Sutherland, J. B., Crawford, D. L., & Pometto III, A. L. (1983). Metabolism of cinnamic, p-coumaric, and ferulic acids by Streptomyces setonii. Canadian Journal of Microbiology, 29(10), 1253–1257. https://doi.org/10.1139/m83-195; Barton, N., Horbal, L., Starck, S., Kohlstedt, M., Luzhetskyy, A., & Wittmann, C. (2018). Enabling the valorization of guaiacol-based lignin: Integrated chemical and biochemical production of cis,cis-muconic acid using metabolically engineered Amycolatopsis sp ATCC 39116. Metabolic Engineering, 45, 200–210. https://doi.org/10.1016/j.ymben.2017.12.001	-
Exophiala jeanselmei	CBS 658.76	Middelhoven, W. J. (1993). Catabolism of benzene compounds by ascomycetous and basidiomycetous yeasts and yeastlike fungi: A literature review and an experimental approach. Antonie van Leeuwenhoek, 63(2), 125–144. https://doi.org/10.1007/bf00872388	-
Comamonas sp.	B-9 (CGMCC No. 4251)	Chen, Y., Chai, L., Zhu, Y., Yang, Z., Zheng, Y., & Zhang, H. (2012). Biodegradation of kraft lignin by a bacterial strain Comamonas sp. B-9 isolated from eroded bamboo slips: Biodegradation of kraft lignin. Journal of Applied Microbiology, 112(5), 900–906. https://doi.org/10.1111/j.1365-2672.2012.05275.x	-
Pseudomonas sp.	Isolate 9.1	Ravi, K., García-Hidalgo, J., Nöbel, M., Gorwa-Grauslund, M. F., & Lidén, G. (2018). Biological conversion of aromatic monolignol compounds by a Pseudomonas isolate from sediments of the Baltic Sea. AMB Express, 8(1). https://doi.org/10.1186/s13568-018-0563-x	-
Rhodosporidium toruloides	IFO0880	Yaegashi, J., Kirby, J., Ito, M., Sun, J., Dutta, T., Mirsiaghi, M., Sundstrom, E. R., Rodriguez, A., Baidoo, E., Tanjore, D., Pray, T., Sale, K., Singh, S., Keasling, J. D., Simmons, B. A., Singer, S. W., Magnuson, J. K., Arkin, A. P., Skerker, J. M., & Gladden, J. M. (2017). Rhodosporidium toruloides: a new platform organism for conversion of lignocellulose into terpene biofuels and bioproducts. Biotechnology for Biofuels, 10(1). https://doi.org/10.1186/s13068-017-0927-5	-
Marinobacterium georgiense	KW-40	GONZaLEZ, J. M., MAYER, F., MORAN, M. A., HODSON, R. E., & WHITMAN, W. B. (1997). Microbulbifer hydrolyticus gen. nov., sp. nov., and Marinobacterium georgiense gen. nov., sp. nov., Two Marine Bacteria from a Lignin-Rich Pulp Mill Waste Enrichment Community. International Journal of Systematic Bacteriology, 47(2), 369–376. https://doi.org/10.1099/00207713-47-2-369	-
Pseudomonas putida	Perestelo isolate 3	Perestelo, F., Rodríguez, A., Pérez, R., Carnicero, A., de la Fuente, G., & Falcón, M. A. (1996). Short communication: Isolation of a bacterium capable of limited degradation of industrial and labelled, natural and synthetic lignins. World Journal of Microbiology and Biotechnology, 12(1), 111–112. https://doi.org/10.1007/bf00327817	-
Acinetobacter calcoaceticus	DSM 586	Delneri, D., Degrassi, G., Rizzo, R., & Bruschi, C. V. (1995). Degradation of trans-ferulic and p-coumaric acid byAcinetobacter calcoaceticus DSM 586. Biochimica et Biophysica Acta (BBA) - General Subjects, 1244(2–3), 363–367. https://doi.org/10.1016/0304-4165(95)00021-3	-
Burkholderia cepacia	KK01	Kato, K., Kozaki, S., & Sakuranaga, M. (1998). Degradation of Lignin Compounds by Bacteria from Termite Guts. Biotechnology Letters, 20(5), 459–462. https://doi.org/10.1023/a:1005432027603	-
Thauera sp.	Cin3,4	Mechichi, T., Patel, B. K., & Sayadi, S. (2005). Anaerobic degradation of methoxylated aromatic compounds by Clostridium methoxybenzovorans and a nitrate-reducing bacterium Thauera sp. strain Cin3,4. International Biodeterioration &amp; Biodegradation, 56(4), 224–230. https://doi.org/10.1016/j.ibiod.2005.09.001	(anaerobically)
Rhodopseudomonas palustris	CGA001	Harwood, C. S., & Gibson, J. (1988). Anaerobic and aerobic metabolism of diverse aromatic compounds by the photosynthetic bacterium Rhodopseudomonas palustris. Applied and Environmental Microbiology, 54(3), 712–717. https://doi.org/10.1128/aem.54.3.712-717.1988	Reported as: 4-hydroxycinnamic acid
Brettanomyces anomalus	NCYC 615	Edlin, D. A., Narbad, A., Dickinson, J. R., & Lloyd, D. (1995). The biotransformation of simple phenolic compounds byBrettanomyces anomalus. FEMS Microbiology Letters, 125(2–3), 311–315. https://doi.org/10.1111/j.1574-6968.1995.tb07374.x	-
Rhodosporidiobolus colostri	DBVPG 10655	Margesin, R., Ludwikowski, T. M., Kutzner, A., & Wagner, A. O. (2022). Low-Temperature Biodegradation of Lignin-Derived Aromatic Model Monomers by the Cold-Adapted Yeast Rhodosporidiobolus colostri Isolated from Alpine Forest Soil. Microorganisms, 10(3), 515. https://doi.org/10.3390/microorganisms10030515	-
Paraburkholderia aromaticivorans	AR20-38	Margesin, R., Volgger, G., Wagner, A. O., Zhang, D., & Poyntner, C. (2021). Biodegradation of lignin monomers and bioconversion of ferulic acid to vanillic acid by Paraburkholderia aromaticivorans AR20-38 isolated from Alpine forest soil. Applied Microbiology and Biotechnology, 105(7), 2967–2977. https://doi.org/10.1007/s00253-021-11215-z	-
