Organism	Strain	Reference(s)	Comment(s)
Rhodopseudomonas palustris	CGA009	Salmon, R. C., Cliff, M. J., Rafferty, J. B., & Kelly, D. J. (2013). The CouPSTU and TarPQM Transporters in Rhodopseudomonas palustris: Redundant, Promiscuous Uptake Systems for Lignin-Derived Aromatic Substrates. PLoS ONE, 8(3), e59844. https://doi.org/10.1371/journal.pone.0059844	-
Acinetobacter baylyi	ADP1	Salvachúa, D., Karp, E. M., Nimlos, C. T., Vardon, D. R., & Beckham, G. T. (2015). Towards lignin consolidated bioprocessing: simultaneous lignin depolymerization and product generation by bacteria. Green Chemistry, 17(11), 4951–4967. https://doi.org/10.1039/c5gc01165e; Fischer, R., Bleichrodt, F. S., & Gerischer, U. C. (2008). Aromatic degradative pathways in Acinetobacter baylyi underlie carbon catabolite repression. Microbiology, 154(10), 3095–3103. https://doi.org/10.1099/mic.0.2008/016907-0	-
Oceanimonas doudoroffii	JCM21046T	Numata, K., & Morisaki, K. (2015). Screening of Marine Bacteria To Synthesize Polyhydroxyalkanoate from Lignin: Contribution of Lignin Derivatives to Biosynthesis by Oceanimonas doudoroffii. ACS Sustainable Chemistry &amp; Engineering, 3(4), 569–573. https://doi.org/10.1021/acssuschemeng.5b00031	-
Pseudomonas putida	KT2440	Salvachúa, D., Karp, E. M., Nimlos, C. T., Vardon, D. R., & Beckham, G. T. (2015). Towards lignin consolidated bioprocessing: simultaneous lignin depolymerization and product generation by bacteria. Green Chemistry, 17(11), 4951–4967. https://doi.org/10.1039/c5gc01165e; Ravi, K., García-Hidalgo, J., Gorwa-Grauslund, M. F., & Lidén, G. (2017). Conversion of lignin model compounds by Pseudomonas putida KT2440 and isolates from compost. Applied Microbiology and Biotechnology, 101(12), 5059–5070. https://doi.org/10.1007/s00253-017-8211-y	-
Cupriavidus necator	JMP134	Pérez-Pantoja, D., De la Iglesia, R., Pieper, D. H., & González, B. (2008). Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacteriumCupriavidus necatorJMP134. FEMS Microbiology Reviews, 32(5), 736–794. https://doi.org/10.1111/j.1574-6976.2008.00122.x	-
Sphingobium sp.	SYK-6	Masai, E., Harada, K., Peng, X., Kitayama, H., Katayama, Y., & Fukuda, M. (2002). Cloning and Characterization of the Ferulic Acid Catabolic Genes of Sphingomonas paucimobilis SYK-6. Applied and Environmental Microbiology, 68(9), 4416–4424. https://doi.org/10.1128/aem.68.9.4416-4424.2002	-
Pseudomonas sp.	HR199	Overhage, J., Priefert, H., & Steinbüchel, A. (1999). Biochemical and Genetic Analyses of Ferulic Acid Catabolism in Pseudomonas sp. Strain HR199. Applied and Environmental Microbiology, 65(11), 4837–4847. https://doi.org/10.1128/aem.65.11.4837-4847.1999	-
Fusarium oxysporum	4287	Michielse, C. B., Reijnen, L., Olivain, C., Alabouvette, C., & Rep, M. (2012). Degradation of aromatic compounds through the β‐ketoadipate pathway is required for pathogenicity of the tomato wilt pathogen <scp>F</scp> usarium oxysporum f. sp. lycopersici. Molecular Plant Pathology, 13(9), 1089–1100. https://doi.org/10.1111/j.1364-3703.2012.00818.x	-
Rhodotorula mucilaginosa	CBS17	Sampaio, J. P. (1999). Utilization of low molecular weight aromatic compounds by heterobasidiomycetous yeasts: taxonomic implications. Canadian Journal of Microbiology, 45(6), 491–512. https://doi.org/10.1139/w99-020	-
Amycolatopsis sp.	75iv2 (ATCC 39116)	Davis, J. R., Goodwin, L. A., Woyke, T., Teshima, H., Bruce, D., Detter, C., Tapia, R., Han, S., Han, J., Pitluck, S., Nolan, M., Mikhailova, N., Land, M. L., & Sello, J. K. (2012). Genome Sequence of Amycolatopsis sp. Strain ATCC 39116, a Plant Biomass-Degrading Actinomycete. Journal of Bacteriology, 194(9), 2396–2397. https://doi.org/10.1128/jb.00186-12; Fleige, C., Hansen, G., Kroll, J., & Steinbüchel, A. (2013). Investigation of the Amycolatopsis sp. Strain ATCC 39116 Vanillin Dehydrogenase and Its Impact on the Biotechnical Production of Vanillin. Applied and Environmental Microbiology, 79(1), 81–90. https://doi.org/10.1128/aem.02358-12; Sutherland, J. B., Crawford, D. L., & Pometto III, A. L. (1983). Metabolism of cinnamic, p-coumaric, and ferulic acids by Streptomyces setonii. Canadian Journal of Microbiology, 29(10), 1253–1257. https://doi.org/10.1139/m83-195	-
Pseudomonas fluorescens	AN103	Narbad, A., & Gasson, M. J. (1998). Metabolism of ferulic acid via vanillin using a novel CoA-dependent pathway in a newly-isolated strain of Pseudomonas fluorescens. Microbiology, 144(5), 1397–1405. https://doi.org/10.1099/00221287-144-5-1397	-
Penicillium chrysogenum	MUCL 31363	Rodríguez, A., Carnicero, A., Perestelo, F., de la Fuente, G., Milstein, O., & Falcón, M. A. (1994). Effect of Penicillium chrysogenum on Lignin Transformation. Applied and Environmental Microbiology, 60(8), 2971–2976. https://doi.org/10.1128/aem.60.8.2971-2976.1994; Falcón, M., Rodríguez, A., Carnicero, A., Regalado, V., Perestelo, F., Milstein, O., & De la Fuente, G. (1995). Isolation of microorganisms with lignin transformation potential from soil of Tenerife island. Soil Biology and Biochemistry, 27(2), 121–126. https://doi.org/10.1016/0038-0717(94)00174-y	-
Rhodotorula vanillica	IGC 4506	Sampaio, J. (1995). Utilization of Low Molecular Weight Lignin-Related Aromatic Compounds for the Selective Isolation of Yeasts: Rhodotorula vanillica, a New Basidiomycetous Yeast Species. Systematic and Applied Microbiology, 17(4), 613–619. https://doi.org/10.1016/s0723-2020(11)80083-4	-
Leucosporidium scottii	G43	Middelhoven, W. J. (1993). Catabolism of benzene compounds by ascomycetous and basidiomycetous yeasts and yeastlike fungi: A literature review and an experimental approach. Antonie van Leeuwenhoek, 63(2), 125–144. https://doi.org/10.1007/bf00872388	-
Exophiala jeanselmei	CBS 658.76	Middelhoven, W. J. (1993). Catabolism of benzene compounds by ascomycetous and basidiomycetous yeasts and yeastlike fungi: A literature review and an experimental approach. Antonie van Leeuwenhoek, 63(2), 125–144. https://doi.org/10.1007/bf00872388	-
Enterobacter aerogenes	L7	Deschamps, A. M., Mahoudeau, G., & Lebeault, J. M. (1980). Fast degradation of kraft lignin by bacteria. European Journal of Applied Microbiology and Biotechnology, 9(1), 45–51. https://doi.org/10.1007/bf00500001	-
Aeromonas sp.	L17	Deschamps, A. M., Mahoudeau, G., & Lebeault, J. M. (1980). Fast degradation of kraft lignin by bacteria. European Journal of Applied Microbiology and Biotechnology, 9(1), 45–51. https://doi.org/10.1007/bf00500001	-
Comamonas sp.	B-9 (CGMCC No. 4251)	Chen, Y., Chai, L., Zhu, Y., Yang, Z., Zheng, Y., & Zhang, H. (2012). Biodegradation of kraft lignin by a bacterial strain Comamonas sp. B-9 isolated from eroded bamboo slips: Biodegradation of kraft lignin. Journal of Applied Microbiology, 112(5), 900–906. https://doi.org/10.1111/j.1365-2672.2012.05275.x	-
Rhizobium sp.	YS-1r	Jackson, C., Couger, M., Prabhakaran, M., Ramachandriya, K., Canaan, P., & Fathepure, B. (2017). Isolation and characterization ofRhizobiumsp. strain YS-1r that degrades lignin in plant biomass. Journal of Applied Microbiology, 122(4), 940–952. https://doi.org/10.1111/jam.13401	-
Thermomonospora mesophila	DSM 43048	McCarthy, A. J., & Broda, P. (1984). Screening for Lignin-degrading Actinomycetes and Characterization of their Activity against [14C]Lignin-labelled Wheat Lignocellulose. Microbiology, 130(11), 2905–2913. https://doi.org/10.1099/00221287-130-11-2905	-
Pseudomonas sp.	Isolate 9.1	Ravi, K., García-Hidalgo, J., Nöbel, M., Gorwa-Grauslund, M. F., & Lidén, G. (2018). Biological conversion of aromatic monolignol compounds by a Pseudomonas isolate from sediments of the Baltic Sea. AMB Express, 8(1). https://doi.org/10.1186/s13568-018-0563-x	-
Rhodosporidium toruloides	IFO0880	Yaegashi, J., Kirby, J., Ito, M., Sun, J., Dutta, T., Mirsiaghi, M., Sundstrom, E. R., Rodriguez, A., Baidoo, E., Tanjore, D., Pray, T., Sale, K., Singh, S., Keasling, J. D., Simmons, B. A., Singer, S. W., Magnuson, J. K., Arkin, A. P., Skerker, J. M., & Gladden, J. M. (2017). Rhodosporidium toruloides: a new platform organism for conversion of lignocellulose into terpene biofuels and bioproducts. Biotechnology for Biofuels, 10(1). https://doi.org/10.1186/s13068-017-0927-5	-
Pseudomonas mira	V2	Jurková, M., & Wurst, M. (1993). Biodegradation of aromatic carboxylic acids byPseudomonas mira. FEMS Microbiology Letters, 111(2–3), 245–250. https://doi.org/10.1111/j.1574-6968.1993.tb06393.x	-
Flavobacterium lutescens	NBRC3084	Hirose, J., Nagayoshi, A., Yamanaka, N., Araki, Y., & Yokoi, H. (2013). Isolation and characterization of bacteria capable of metabolizing lignin-derived low molecular weight compounds. Biotechnology and Bioprocess Engineering, 18(4), 736–741. https://doi.org/10.1007/s12257-012-0807-6	-
Azotobacter vinelandii	NBRC13581	Hirose, J., Nagayoshi, A., Yamanaka, N., Araki, Y., & Yokoi, H. (2013). Isolation and characterization of bacteria capable of metabolizing lignin-derived low molecular weight compounds. Biotechnology and Bioprocess Engineering, 18(4), 736–741. https://doi.org/10.1007/s12257-012-0807-6	-
Pseudomonas sp.	KF704	Hirose, J., Nagayoshi, A., Yamanaka, N., Araki, Y., & Yokoi, H. (2013). Isolation and characterization of bacteria capable of metabolizing lignin-derived low molecular weight compounds. Biotechnology and Bioprocess Engineering, 18(4), 736–741. https://doi.org/10.1007/s12257-012-0807-6	-
Pseudomonas putida	F1	Hirose, J., Nagayoshi, A., Yamanaka, N., Araki, Y., & Yokoi, H. (2013). Isolation and characterization of bacteria capable of metabolizing lignin-derived low molecular weight compounds. Biotechnology and Bioprocess Engineering, 18(4), 736–741. https://doi.org/10.1007/s12257-012-0807-6	-
Marinobacterium georgiense	KW-40	GONZaLEZ, J. M., MAYER, F., MORAN, M. A., HODSON, R. E., & WHITMAN, W. B. (1997). Microbulbifer hydrolyticus gen. nov., sp. nov., and Marinobacterium georgiense gen. nov., sp. nov., Two Marine Bacteria from a Lignin-Rich Pulp Mill Waste Enrichment Community. International Journal of Systematic Bacteriology, 47(2), 369–376. https://doi.org/10.1099/00207713-47-2-369	-
Microbulbifer hydrolyticus	IRE-31	GONZaLEZ, J. M., MAYER, F., MORAN, M. A., HODSON, R. E., & WHITMAN, W. B. (1997). Microbulbifer hydrolyticus gen. nov., sp. nov., and Marinobacterium georgiense gen. nov., sp. nov., Two Marine Bacteria from a Lignin-Rich Pulp Mill Waste Enrichment Community. International Journal of Systematic Bacteriology, 47(2), 369–376. https://doi.org/10.1099/00207713-47-2-369	-
Pseudomonas putida	Perestelo isolate 3	Perestelo, F., Rodríguez, A., Pérez, R., Carnicero, A., de la Fuente, G., & Falcón, M. A. (1996). Short communication: Isolation of a bacterium capable of limited degradation of industrial and labelled, natural and synthetic lignins. World Journal of Microbiology and Biotechnology, 12(1), 111–112. https://doi.org/10.1007/bf00327817	-
Acinetobacter calcoaceticus	DSM 586	Delneri, D., Degrassi, G., Rizzo, R., & Bruschi, C. V. (1995). Degradation of trans-ferulic and p-coumaric acid byAcinetobacter calcoaceticus DSM 586. Biochimica et Biophysica Acta (BBA) - General Subjects, 1244(2–3), 363–367. https://doi.org/10.1016/0304-4165(95)00021-3	-
Fusarium solani	MUCL 35071	Falcón, M., Rodríguez, A., Carnicero, A., Regalado, V., Perestelo, F., Milstein, O., & De la Fuente, G. (1995). Isolation of microorganisms with lignin transformation potential from soil of Tenerife island. Soil Biology and Biochemistry, 27(2), 121–126. https://doi.org/10.1016/0038-0717(94)00174-y	-
Fusarium oxysporum	MUCL 30736	Falcón, M., Rodríguez, A., Carnicero, A., Regalado, V., Perestelo, F., Milstein, O., & De la Fuente, G. (1995). Isolation of microorganisms with lignin transformation potential from soil of Tenerife island. Soil Biology and Biochemistry, 27(2), 121–126. https://doi.org/10.1016/0038-0717(94)00174-y	-
Pestalotia oxyanthi	MUCL 35070	Falcón, M., Rodríguez, A., Carnicero, A., Regalado, V., Perestelo, F., Milstein, O., & De la Fuente, G. (1995). Isolation of microorganisms with lignin transformation potential from soil of Tenerife island. Soil Biology and Biochemistry, 27(2), 121–126. https://doi.org/10.1016/0038-0717(94)00174-y	-
Rhodotorula rubra	IFO 889	Huang, Z., Dostal, L., & Rosazza, J. (1993). Mechanisms of ferulic acid conversions to vanillic acid and guaiacol by Rhodotorula rubra.. Journal of Biological Chemistry, 268(32), 23954–23958. https://doi.org/10.1016/s0021-9258(20)80477-3	-
Acetobacterium woodii	NZva16	Bache, R., & Pfennig, N. (1981). Selective isolation of Acetobacterium woodii on methoxylated aromatic acids and determination of growth yields. Archives of Microbiology, 130(3), 255–261. https://doi.org/10.1007/bf00459530	(anaerobically)
Clostridium methoxybenzovorans	SR3	Mechichi, T., Patel, B. K., & Sayadi, S. (2005). Anaerobic degradation of methoxylated aromatic compounds by Clostridium methoxybenzovorans and a nitrate-reducing bacterium Thauera sp. strain Cin3,4. International Biodeterioration &amp; Biodegradation, 56(4), 224–230. https://doi.org/10.1016/j.ibiod.2005.09.001; Mechichi, T., Patel, B. K., & Sayadi, S. (2005). Anaerobic degradation of methoxylated aromatic compounds by Clostridium methoxybenzovorans and a nitrate-reducing bacterium Thauera sp. strain Cin3,4. International Biodeterioration &amp; Biodegradation, 56(4), 224–230. https://doi.org/10.1016/j.ibiod.2005.09.001	(anaerobically); (anaerobically)
Enterobacter sp.	DG-6	Grbić-Galić, D. (1985). Fermentative and oxidative transformation of ferulate by a facultatively anaerobic bacterium isolated from sewage sludge. Applied and Environmental Microbiology, 50(4), 1052–1057. https://doi.org/10.1128/aem.50.4.1052-1057.1985	(anaerobically)
Rhodopseudomonas palustris	CGA001	Harwood, C. S., & Gibson, J. (1988). Anaerobic and aerobic metabolism of diverse aromatic compounds by the photosynthetic bacterium Rhodopseudomonas palustris. Applied and Environmental Microbiology, 54(3), 712–717. https://doi.org/10.1128/aem.54.3.712-717.1988; Harwood, C. S., & Gibson, J. (1988). Anaerobic and aerobic metabolism of diverse aromatic compounds by the photosynthetic bacterium Rhodopseudomonas palustris. Applied and Environmental Microbiology, 54(3), 712–717. https://doi.org/10.1128/aem.54.3.712-717.1988	-
Holophaga foetida	TMBS4	Bak, F., & Finster, K. (1993). Formation of Dimethylsulfide and Methanethiol from Methoxylated Aromatic Compounds and Inorganic Sulfide by Newly Isolated Anaerobic Bacteria. Biogeochemistry of Global Change, 782–795. https://doi.org/10.1007/978-1-4615-2812-8_41	(anaerobically)
Brettanomyces anomalus	NCYC 615	Edlin, D. A., Narbad, A., Dickinson, J. R., & Lloyd, D. (1995). The biotransformation of simple phenolic compounds byBrettanomyces anomalus. FEMS Microbiology Letters, 125(2–3), 311–315. https://doi.org/10.1111/j.1574-6968.1995.tb07374.x	-
Rhodotorula  sp.	R2	Hainal, A. R., Capraru, A. M., Volf, I., & Popa, V. I. (2012). Lignin as a carbon source for the cultivation of some Rhodotorula species.. Cellul. Chem. Technol, 46, 87-96.	-
Desulfobacterium phenolicum	Ph01	Bak, F., & Widdel, F. (1986). Anaerobic degradation of phenol and phenol derivatives by Desulfobacterium phenolicum sp. nov.. Archives of Microbiology, 146(2), 177–180. https://doi.org/10.1007/bf00402347	(anaerobically)
Rhodococcus jostii	RHA1	Sainsbury, P. D., Hardiman, E. M., Ahmad, M., Otani, H., Seghezzi, N., Eltis, L. D., & Bugg, T. D. H. (2013). Breaking Down Lignin to High-Value Chemicals: The Conversion of Lignocellulose to Vanillin in a Gene Deletion Mutant of Rhodococcus jostii RHA1. ACS Chemical Biology, 8(10), 2151–2156. https://doi.org/10.1021/cb400505a	-
Rhodosporidiobolus colostri	DBVPG 10655	Margesin, R., Ludwikowski, T. M., Kutzner, A., & Wagner, A. O. (2022). Low-Temperature Biodegradation of Lignin-Derived Aromatic Model Monomers by the Cold-Adapted Yeast Rhodosporidiobolus colostri Isolated from Alpine Forest Soil. Microorganisms, 10(3), 515. https://doi.org/10.3390/microorganisms10030515	-
Paraburkholderia aromaticivorans	AR20-38	Margesin, R., Volgger, G., Wagner, A. O., Zhang, D., & Poyntner, C. (2021). Biodegradation of lignin monomers and bioconversion of ferulic acid to vanillic acid by Paraburkholderia aromaticivorans AR20-38 isolated from Alpine forest soil. Applied Microbiology and Biotechnology, 105(7), 2967–2977. https://doi.org/10.1007/s00253-021-11215-z	-
Sphingomonas aromaticivorans	F199	Cecil, J. H., Garcia, D. C., Giannone, R. J., & Michener, J. K. (2018). Rapid, Parallel Identification of Catabolism Pathways of Lignin-Derived Aromatic Compounds in Novosphingobium aromaticivorans. Applied and Environmental Microbiology, 84(22). https://doi.org/10.1128/aem.01185-18	-
