Organism	Strain	Reference(s)	Comment(s)
Cupriavidus necator	JMP134	Pérez-Pantoja, D., De la Iglesia, R., Pieper, D. H., & González, B. (2008). Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacteriumCupriavidus necatorJMP134. FEMS Microbiology Reviews, 32(5), 736–794. https://doi.org/10.1111/j.1574-6976.2008.00122.x	-
Pseudomonas putida	KT2440	Jiménez, J. I., Miñambres, B., García, J. L., & Díaz, E. (2002). Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440. Environmental Microbiology, 4(12), 824–841. https://doi.org/10.1046/j.1462-2920.2002.00370.x	-
Corynebacterium glutamicum	ATCC13032	Qi, S., Chaudhry, M. T., Zhang, Y., Meng, B., Huang, Y., Zhao, K., Poetsch, A., Jiang, C., Liu, S., & Liu, S. (2007). Comparative proteomes of Corynebacterium glutamicum grown on aromatic compounds revealed novel proteins involved in aromatic degradation and a clear link between aromatic catabolism and gluconeogenesis via fructose‐1,6‐bisphosphatase. PROTEOMICS, 7(20), 3775–3787. https://doi.org/10.1002/pmic.200700481	-
Klebsiella pneumoniae	M5a1	Jones, D. C. N., & Cooper, R. A. (1990). Catabolism of 3-hydroxybenzoate by the gentisate pathway in Klebsiella pneumoniae M5a1. Archives of Microbiology, 154(5), 489–495. https://doi.org/10.1007/bf00245233	-
Streptomyces viridosporus	T7A	Davis, J. R., Goodwin, L., Teshima, H., Detter, C., Tapia, R., Han, C., Huntemann, M., Wei, C. L., Han, J., Chen, A., Kyrpides, N., Mavrommatis, K., Szeto, E., Markowitz, V., Ivanova, N., Mikhailova, N., Ovchinnikova, G., Pagani, I., Pati, A., ... Sello, J. K. (2013). Genome Sequence of Streptomyces viridosporus Strain T7A ATCC 39115, a Lignin-Degrading Actinomycete. Genome Announcements, 1(4). https://doi.org/10.1128/genomea.00416-13	-
Oceanimonas doudoroffii	JCM21046T	Numata, K., & Morisaki, K. (2015). Screening of Marine Bacteria To Synthesize Polyhydroxyalkanoate from Lignin: Contribution of Lignin Derivatives to Biosynthesis by Oceanimonas doudoroffii. ACS Sustainable Chemistry &amp; Engineering, 3(4), 569–573. https://doi.org/10.1021/acssuschemeng.5b00031	-
Rhodotorula graminis	WP1	Durham, D. R., McNamee, C. G., & Stewart, D. B. (1984). Dissimilation of aromatic compounds in Rhodotorula graminis: biochemical characterization of pleiotropically negative mutants. Journal of Bacteriology, 160(2), 771–777. https://doi.org/10.1128/jb.160.2.771-777.1984	-
Candida parapsilosis	CBS604	Middelhoven, W. J. (1993). Catabolism of benzene compounds by ascomycetous and basidiomycetous yeasts and yeastlike fungi: A literature review and an experimental approach. Antonie van Leeuwenhoek, 63(2), 125–144. https://doi.org/10.1007/bf00872388; Gérecová, G., Neboháčová, M., Zeman, I., Pryszcz, L. P., Tomáška, U., Gabaldón, T., & Nosek, J. (2015). Metabolic gene clusters encoding the enzymes of two branches of the 3-oxoadipate pathway in the pathogenic yeast Candida albicans. FEMS Yeast Research, 15(3). https://doi.org/10.1093/femsyr/fov006	-
Trichosporon cutaneum	CBS2466	Middelhoven, W. J. (1993). Catabolism of benzene compounds by ascomycetous and basidiomycetous yeasts and yeastlike fungi: A literature review and an experimental approach. Antonie van Leeuwenhoek, 63(2), 125–144. https://doi.org/10.1007/bf00872388	-
Rhodococcus fascians	AY730713	Song, Y. J. (2009). Characterization of aromatic hydrocarbon degrading bacteria isolated from pine litter.. Korean Journal of Microbiology and Biotechnology, 37, 333-339.	-
Achromobacter denitrificans	SP1	Benjamin, S., Kamimura, N., Takahashi, K., & Masai, E. (2016). Achromobacter denitrificans SP1 efficiently utilizes 16 phthalate diesters and their downstream products through protocatechuate 3,4-cleavage pathway. Ecotoxicology and Environmental Safety, 134, 172–178. https://doi.org/10.1016/j.ecoenv.2016.08.028	-
Acinetobacter baylyi	ADP1	Fischer, R., Bleichrodt, F. S., & Gerischer, U. C. (2008). Aromatic degradative pathways in Acinetobacter baylyi underlie carbon catabolite repression. Microbiology, 154(10), 3095–3103. https://doi.org/10.1099/mic.0.2008/016907-0	-
Pseudomonas sp.	HR199	Overhage, J., Priefert, H., & Steinbüchel, A. (1999). Biochemical and Genetic Analyses of Ferulic Acid Catabolism in Pseudomonas sp. Strain HR199. Applied and Environmental Microbiology, 65(11), 4837–4847. https://doi.org/10.1128/aem.65.11.4837-4847.1999	-
Enterobacter cloacae	P241	Yoshida, T., Inami, Y., Matsui, T., & Nagasawa, T. (2010). Regioselective carboxylation of catechol by 3,4-dihydroxybenzoate decarboxylase of Enterobacter cloacae P. Biotechnology Letters, 32(5), 701–705. https://doi.org/10.1007/s10529-010-0210-3	-
Treponema primitia	ZAS-1	Lucey, K. S., & Leadbetter, J. R. (2013). Catechol 2,3‐dioxygenase and other meta‐cleavage catabolic pathway genes in the ‘anaerobic’ termite gut spirochete <scp>T</scp>reponema primitia. Molecular Ecology, 23(6), 1531–1543. https://doi.org/10.1111/mec.12598	-
Sinorhizobium meliloti	Rm1021	MacLean, A. M., MacPherson, G., Aneja, P., & Finan, T. M. (2006). Characterization of the β-Ketoadipate Pathway inSinorhizobium meliloti. Applied and Environmental Microbiology, 72(8), 5403–5413. https://doi.org/10.1128/aem.00580-06	-
Rhodotorula mucilaginosa	CBS17	Sampaio, J. P. (1999). Utilization of low molecular weight aromatic compounds by heterobasidiomycetous yeasts: taxonomic implications. Canadian Journal of Microbiology, 45(6), 491–512. https://doi.org/10.1139/w99-020	-
Amycolatopsis sp.	75iv2 (ATCC 39116)	Davis, J. R., Goodwin, L. A., Woyke, T., Teshima, H., Bruce, D., Detter, C., Tapia, R., Han, S., Han, J., Pitluck, S., Nolan, M., Mikhailova, N., Land, M. L., & Sello, J. K. (2012). Genome Sequence of Amycolatopsis sp. Strain ATCC 39116, a Plant Biomass-Degrading Actinomycete. Journal of Bacteriology, 194(9), 2396–2397. https://doi.org/10.1128/jb.00186-12; Pometto III, A. L., Sutherland, J. B., & Crawford, D. L. (1981). Streptomyces setonii: catabolism of vanillic acid via guaiacol and catechol. Canadian Journal of Microbiology, 27(6), 636–638. https://doi.org/10.1139/m81-097	-
Pseudomonas fluorescens	AN103	Paulsen, I. T., Press, C. M., Ravel, J., Kobayashi, D. Y., Myers, G. S. A., Mavrodi, D. V., DeBoy, R. T., Seshadri, R., Ren, Q., Madupu, R., Dodson, R. J., Durkin, A. S., Brinkac, L. M., Daugherty, S. C., Sullivan, S. A., Rosovitz, M. J., Gwinn, M. L., Zhou, L., Schneider, D. J., ... Loper, J. E. (2005). Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5. Nature Biotechnology, 23(7), 873–878. https://doi.org/10.1038/nbt1110	-
Exophiala jeanselmei	CBS 658.76	Middelhoven, W. J. (1993). Catabolism of benzene compounds by ascomycetous and basidiomycetous yeasts and yeastlike fungi: A literature review and an experimental approach. Antonie van Leeuwenhoek, 63(2), 125–144. https://doi.org/10.1007/bf00872388	-
Enterobacter aerogenes	L7	Deschamps, A. M., Mahoudeau, G., & Lebeault, J. M. (1980). Fast degradation of kraft lignin by bacteria. European Journal of Applied Microbiology and Biotechnology, 9(1), 45–51. https://doi.org/10.1007/bf00500001	-
Aeromonas sp.	L17	Deschamps, A. M., Mahoudeau, G., & Lebeault, J. M. (1980). Fast degradation of kraft lignin by bacteria. European Journal of Applied Microbiology and Biotechnology, 9(1), 45–51. https://doi.org/10.1007/bf00500001	-
Paenibacillus sp.	JJ-1b	Kasai, D., Fujinami, T., Abe, T., Mase, K., Katayama, Y., Fukuda, M., & Masai, E. (2009). Uncovering the Protocatechuate 2,3-Cleavage Pathway Genes. Journal of Bacteriology, 191(21), 6758–6768. https://doi.org/10.1128/jb.00840-09	-
Candida orthopsilosis	MCO457	Gérecová, G., Neboháčová, M., Zeman, I., Pryszcz, L. P., Tomáška, U., Gabaldón, T., & Nosek, J. (2015). Metabolic gene clusters encoding the enzymes of two branches of the 3-oxoadipate pathway in the pathogenic yeast Candida albicans. FEMS Yeast Research, 15(3). https://doi.org/10.1093/femsyr/fov006	-
Pseudomonas putida	Perestelo isolate 3	Perestelo, F., Rodríguez, A., Pérez, R., Carnicero, A., de la Fuente, G., & Falcón, M. A. (1996). Short communication: Isolation of a bacterium capable of limited degradation of industrial and labelled, natural and synthetic lignins. World Journal of Microbiology and Biotechnology, 12(1), 111–112. https://doi.org/10.1007/bf00327817	-
Acinetobacter calcoaceticus	DSM 586	Delneri, D., Degrassi, G., Rizzo, R., & Bruschi, C. V. (1995). Degradation of trans-ferulic and p-coumaric acid byAcinetobacter calcoaceticus DSM 586. Biochimica et Biophysica Acta (BBA) - General Subjects, 1244(2–3), 363–367. https://doi.org/10.1016/0304-4165(95)00021-3	-
Rhodococcus erythropolis	TA421	Chung, S. Y., Maeda, M., Song, E., Horikoshij, K., & Kudo, T. (1994). A Gram-positive Polychlorinated Biphenyl-degrading Bacterium,Rhodococcus erythropolisStrain TA421, Isolated from a Termite Ecosystem. Bioscience, Biotechnology, and Biochemistry, 58(11), 2111–2113. https://doi.org/10.1271/bbb.58.2111	-
Streptomyces coelicolor	A3(2) M600	Davis, J. R., & Sello, J. K. (2009). Regulation of genes in Streptomyces bacteria required for catabolism of lignin-derived aromatic compounds. Applied Microbiology and Biotechnology, 86(3), 921–929. https://doi.org/10.1007/s00253-009-2358-0	-
Rhodococcus rhodochrous	116	Karlson, U., Dwyer, D. F., Hooper, S. W., Moore, E. R., Timmis, K. N., & Eltis, L. D. (1993). Two independently regulated cytochromes P-450 in a Rhodococcus rhodochrous strain that degrades 2-ethoxyphenol and 4-methoxybenzoate. Journal of Bacteriology, 175(5), 1467–1474. https://doi.org/10.1128/jb.175.5.1467-1474.1993	-
Rhodococcus sp.	UKMP-5M	Azman, H. (2015). Bioligninolysis: Degradation Of Ionic Liquid Derived Lignin By Rhodococcus. PhD Thesis, Department Of Chemistry, Faculty Of Natural Sciences,Imperial College London.	-
Rhodotorula rubra	IFO 889	Huang, Z., Dostal, L., & Rosazza, J. (1993). Mechanisms of ferulic acid conversions to vanillic acid and guaiacol by Rhodotorula rubra.. Journal of Biological Chemistry, 268(32), 23954–23958. https://doi.org/10.1016/s0021-9258(20)80477-3	-
Desulfobacterium catecholicum	NZva20	Szewzyk, R., & Pfennig, N. (1987). Complete oxidation of catechol by the strictly anaerobic sulfate-reducing Desulfobacterium catecholicum sp. nov.. Archives of Microbiology, 147(2), 163–168. https://doi.org/10.1007/bf00415278	(anaerobically)
Thauera aromatica	K172	Mechichi, T., Stackebrandt, E., Gad’on, N., & Fuchs, G. (2002). Phylogenetic and metabolic diversity of bacteria degrading aromatic compounds under denitrifying conditions, and description of Thauera phenylacetica sp. nov., Thauera aminoaromatica sp. nov., and Azoarcus buckelii sp. nov.. Archives of Microbiology, 178(1), 26–35. https://doi.org/10.1007/s00203-002-0422-6	(anaerobically)
Burkholderia cepacia	Song isolate 1	Song, Y. J. (2009). Characterization of aromatic hydrocarbon degrading bacteria isolated from pine litter.. Korean Journal of Microbiology and Biotechnology, 37, 333-339.	-
Pantoea dispersa	Song isolate 2	Song, Y. J. (2009). Characterization of aromatic hydrocarbon degrading bacteria isolated from pine litter.. Korean Journal of Microbiology and Biotechnology, 37, 333-339.	-
Rhodococcus fascians	Song isolate 3	Song, Y. J. (2009). Characterization of aromatic hydrocarbon degrading bacteria isolated from pine litter.. Korean Journal of Microbiology and Biotechnology, 37, 333-339.	-
Flavimonas oryzihabitans	Song isolate 4	Song, Y. J. (2009). Characterization of aromatic hydrocarbon degrading bacteria isolated from pine litter.. Korean Journal of Microbiology and Biotechnology, 37, 333-339.	-
Microbacterium esteraromaticum	Song isolate 5	Song, Y. J. (2009). Characterization of aromatic hydrocarbon degrading bacteria isolated from pine litter.. Korean Journal of Microbiology and Biotechnology, 37, 333-339.	-
Acetobacterium woodii	NZva16	Bache, R., & Pfennig, N. (1981). Selective isolation of Acetobacterium woodii on methoxylated aromatic acids and determination of growth yields. Archives of Microbiology, 130(3), 255–261. https://doi.org/10.1007/bf00459530	(anaerobically)
Thauera sp.	Cin3,4	Mechichi, T., Patel, B. K., & Sayadi, S. (2005). Anaerobic degradation of methoxylated aromatic compounds by Clostridium methoxybenzovorans and a nitrate-reducing bacterium Thauera sp. strain Cin3,4. International Biodeterioration &amp; Biodegradation, 56(4), 224–230. https://doi.org/10.1016/j.ibiod.2005.09.001; Mechichi, T., Patel, B. K., & Sayadi, S. (2005). Anaerobic degradation of methoxylated aromatic compounds by Clostridium methoxybenzovorans and a nitrate-reducing bacterium Thauera sp. strain Cin3,4. International Biodeterioration &amp; Biodegradation, 56(4), 224–230. https://doi.org/10.1016/j.ibiod.2005.09.001	(anaerobically); Reported as: 3,4-dihydroxybenzoic acid
Rhodopseudomonas palustris	CGA001	Harwood, C. S., & Gibson, J. (1988). Anaerobic and aerobic metabolism of diverse aromatic compounds by the photosynthetic bacterium Rhodopseudomonas palustris. Applied and Environmental Microbiology, 54(3), 712–717. https://doi.org/10.1128/aem.54.3.712-717.1988; Harwood, C. S., & Gibson, J. (1988). Anaerobic and aerobic metabolism of diverse aromatic compounds by the photosynthetic bacterium Rhodopseudomonas palustris. Applied and Environmental Microbiology, 54(3), 712–717. https://doi.org/10.1128/aem.54.3.712-717.1988; Harwood, C. S., & Gibson, J. (1988). Anaerobic and aerobic metabolism of diverse aromatic compounds by the photosynthetic bacterium Rhodopseudomonas palustris. Applied and Environmental Microbiology, 54(3), 712–717. https://doi.org/10.1128/aem.54.3.712-717.1988	(anaerobically)
Cupriavidus pinatubonensis	1245	Sato, Y., Nishihara, H., Yoshida, M., Watanabe, M., Rondal, J. D., Concepcion, R. N., & Ohta, H. (2006). Cupriavidus pinatubonensis sp. nov. and Cupriavidus laharis sp. nov., novel hydrogen-oxidizing, facultatively chemolithotrophic bacteria isolated from volcanic mudflow deposits from Mt. Pinatubo in the Philippines. International Journal of Systematic and Evolutionary Microbiology, 56(5), 973–978. https://doi.org/10.1099/ijs.0.63922-0	-
Pelobacter acidigallici	Ma Gal2 (DSM 2377)	Schink, B., & Pfennig, N. (1982). Fermentation of trihydroxybenzenes by Pelobacter acidigallici gen. nov. sp. nov., a new strictly anaerobic, non-sporeforming bacterium. Archives of Microbiology, 133(3), 195–201. https://doi.org/10.1007/bf00415000	(anaerobically)
Phialophora mutabilis	203-E-15-y-l	Eriksson, K. E., Gupta, J. K., Nishida, A., & Rao, M. (1984). Syringic Acid Metabolism by Some White-rot, Soft-rot and Brown-rot Fungi. Microbiology, 130(10), 2457–2464. https://doi.org/10.1099/00221287-130-10-2457	-
Comamonas testosteroni	BR6020	Providenti, M. A., O’Brien, J. M., Ruff, J., Cook, A. M., & Lambert, I. B. (2006). Metabolism of Isovanillate, Vanillate, and Veratrate by Comamonas testosteroni Strain BR6020. Journal of Bacteriology, 188(11), 3862–3869. https://doi.org/10.1128/jb.01675-05	-
