Gene Name	Reference(s)
Sph_desA	Masai, E., Sasaki, M., Minakawa, Y., Abe, T., Sonoki, T., Miyauchi, K., Katayama, Y., & Fukuda, M. (2004). A Novel Tetrahydrofolate-Dependent O -Demethylase Gene Is Essential for Growth of Sphingomonas paucimobilis SYK-6 with Syringate. Journal of Bacteriology, 186(9), 2757–2765. https://doi.org/10.1128/jb.186.9.2757-2765.2004
Sph_desB	Kasai, D., Masai, E., Miyauchi, K., Katayama, Y., & Fukuda, M. (2005). Characterization of the Gallate Dioxygenase Gene: Three Distinct Ring Cleavage Dioxygenases Are Involved in Syringate Degradation by Sphingomonas paucimobilis SYK-6. Journal of Bacteriology, 187(15), 5067–5074. https://doi.org/10.1128/jb.187.15.5067-5074.2005
Sph_desZ	Kasai, D., Masai, E., Miyauchi, K., Katayama, Y., & Fukuda, M. (2004). Characterization of the 3- O -Methylgallate Dioxygenase Gene and Evidence of Multiple 3- O -Methylgallate Catabolic Pathways in Sphingomonas paucimobilis SYK-6. Journal of Bacteriology, 186(15), 4951–4959. https://doi.org/10.1128/jb.186.15.4951-4959.2004
Sph_ferA	Masai, E., Harada, K., Peng, X., Kitayama, H., Katayama, Y., & Fukuda, M. (2002). Cloning and Characterization of the Ferulic Acid Catabolic Genes of Sphingomonas paucimobilis SYK-6. Applied and Environmental Microbiology, 68(9), 4416–4424. https://doi.org/10.1128/aem.68.9.4416-4424.2002
Sph_ferB	Masai, E., Harada, K., Peng, X., Kitayama, H., Katayama, Y., & Fukuda, M. (2002). Cloning and Characterization of the Ferulic Acid Catabolic Genes of Sphingomonas paucimobilis SYK-6. Applied and Environmental Microbiology, 68(9), 4416–4424. https://doi.org/10.1128/aem.68.9.4416-4424.2002
Sph_ferB2	Masai, E., Harada, K., Peng, X., Kitayama, H., Katayama, Y., & Fukuda, M. (2002). Cloning and Characterization of the Ferulic Acid Catabolic Genes of Sphingomonas paucimobilis SYK-6. Applied and Environmental Microbiology, 68(9), 4416–4424. https://doi.org/10.1128/aem.68.9.4416-4424.2002
Sph_ligA	Noda, Y., Nishikawa, S., Shiozuka, K., Kadokura, H., Nakajima, H., Yoda, K., Katayama, Y., Morohoshi, N., Haraguchi, T., & Yamasaki, M. (1990). Molecular cloning of the protocatechuate 4,5-dioxygenase genes of Pseudomonas paucimobilis. Journal of Bacteriology, 172(5), 2704–2709. https://doi.org/10.1128/jb.172.5.2704-2709.1990
Sph_ligB	Noda, Y., Nishikawa, S., Shiozuka, K., Kadokura, H., Nakajima, H., Yoda, K., Katayama, Y., Morohoshi, N., Haraguchi, T., & Yamasaki, M. (1990). Molecular cloning of the protocatechuate 4,5-dioxygenase genes of Pseudomonas paucimobilis. Journal of Bacteriology, 172(5), 2704–2709. https://doi.org/10.1128/jb.172.5.2704-2709.1990
Sph_ligC	Masai, E., Momose, K., Hara, H., Nishikawa, S., Katayama, Y., & Fukuda, M. (2000). Genetic and Biochemical Characterization of 4-Carboxy-2-Hydroxymuconate-6-Semialdehyde Dehydrogenase and Its Role in the Protocatechuate 4,5-Cleavage Pathway in Sphingomonas paucimobilis SYK-6. Journal of Bacteriology, 182(23), 6651–6658. https://doi.org/10.1128/jb.182.23.6651-6658.2000
Sph_ligI	Masai, E., Shinohara, S., Hara, H., Nishikawa, S., Katayama, Y., & Fukuda, M. (1999). Genetic and Biochemical Characterization of a 2-Pyrone-4,6-Dicarboxylic Acid Hydrolase Involved in the Protocatechuate 4,5-Cleavage Pathway of Sphingomonas paucimobilis SYK-6. Journal of Bacteriology, 181(1), 55–62. https://doi.org/10.1128/jb.181.1.55-62.1999
Sph_ligJ	Hara, H., Masai, E., Katayama, Y., & Fukuda, M. (2000). The 4-Oxalomesaconate Hydratase Gene, Involved in the Protocatechuate 4,5-Cleavage Pathway, Is Essential to Vanillate and Syringate Degradation in Sphingomonas paucimobilis SYK-6. Journal of Bacteriology, 182(24), 6950–6957. https://doi.org/10.1128/jb.182.24.6950-6957.2000
Sph_ligK	Hara, H., Masai, E., Miyauchi, K., Katayama, Y., & Fukuda, M. (2003). Characterization of the 4-Carboxy-4-Hydroxy-2-Oxoadipate Aldolase Gene and Operon Structure of the Protocatechuate 4,5-Cleavage Pathway Genes in Sphingomonas paucimobilis SYK-6. Journal of Bacteriology, 185(1), 41–50. https://doi.org/10.1128/jb.185.1.41-50.2003
Sph_ligM	Abe, T., Masai, E., Miyauchi, K., Katayama, Y., & Fukuda, M. (2005). A Tetrahydrofolate-Dependent O -Demethylase, LigM, Is Crucial for Catabolism of Vanillate and Syringate in Sphingomonas paucimobilis SYK-6. Journal of Bacteriology, 187(6), 2030–2037. https://doi.org/10.1128/jb.187.6.2030-2037.2005
Sph_ligV	MASAI, E., YAMAMOTO, Y., INOUE, T., TAKAMURA, K., HARA, H., KASAI, D., KATAYAMA, Y., & FUKUDA, M. (2007). Characterization ofligVEssential for Catabolism of Vanillin bySphingomonas paucimobilisSYK-6. Bioscience, Biotechnology, and Biochemistry, 71(10), 2487–2492. https://doi.org/10.1271/bbb.70267
Sph_pinZ	Fukuhara, Y., Kamimura, N., Nakajima, M., Hishiyama, S., Hara, H., Kasai, D., Tsuji, Y., Narita-Yamada, S., Nakamura, S., Katano, Y., Fujita, N., Katayama, Y., Fukuda, M., Kajita, S., & Masai, E. (2013). Discovery of pinoresinol reductase genes in sphingomonads. Enzyme and Microbial Technology, 52(1), 38–43. https://doi.org/10.1016/j.enzmictec.2012.10.004